Detailed information
Bioinformatically predicted
Overview
| Name | comA | Type | Machinery gene |
| Locus tag | GM3708_RS09460 | Genome accession | NZ_AP014815 |
| Coordinates | 2134773..2136068 (+) | Length | 431 a.a. |
| NCBI ID | WP_066345992.1 | Uniprot ID | A0A0D6AFG4 |
| Organism | Geminocystis sp. NIES-3708 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2129773..2141068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3708_RS09425 (GM3708_1955) | - | 2129876..2130409 (-) | 534 | WP_066345968.1 | pentapeptide repeat-containing protein | - |
| GM3708_RS09430 (GM3708_1956) | - | 2130422..2131060 (-) | 639 | WP_066345970.1 | hypothetical protein | - |
| GM3708_RS09435 (GM3708_1957) | gloB | 2131318..2132091 (+) | 774 | WP_066345974.1 | hydroxyacylglutathione hydrolase | - |
| GM3708_RS09440 (GM3708_1958) | - | 2132367..2132597 (-) | 231 | WP_066345975.1 | ferredoxin-thioredoxin reductase variable chain | - |
| GM3708_RS09445 (GM3708_1959) | purS | 2133028..2133288 (+) | 261 | WP_066345977.1 | phosphoribosylformylglycinamidine synthase subunit PurS | - |
| GM3708_RS09450 (GM3708_1960) | purQ | 2133335..2134015 (+) | 681 | WP_066345984.1 | phosphoribosylformylglycinamidine synthase subunit PurQ | - |
| GM3708_RS09455 (GM3708_1961) | - | 2134079..2134759 (+) | 681 | WP_066345990.1 | uracil-DNA glycosylase family protein | - |
| GM3708_RS09460 (GM3708_1962) | comA | 2134773..2136068 (+) | 1296 | WP_066345992.1 | phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein | Machinery gene |
| GM3708_RS09465 (GM3708_1963) | groES | 2136390..2136701 (+) | 312 | WP_066345994.1 | co-chaperone GroES | - |
| GM3708_RS09470 (GM3708_1964) | groL | 2136821..2138446 (+) | 1626 | WP_066346001.1 | chaperonin GroEL | - |
| GM3708_RS09475 (GM3708_1965) | - | 2138754..2140280 (+) | 1527 | WP_066346003.1 | YifB family Mg chelatase-like AAA ATPase | - |
Sequence
Protein
Download Length: 431 a.a. Molecular weight: 48315.99 Da Isoelectric Point: 6.6631
>NTDB_id=66929 GM3708_RS09460 WP_066345992.1 2134773..2136068(+) (comA) [Geminocystis sp. NIES-3708]
MVKIISLSLTIISYLLFLNGCQSQVKKLPPLSQDSAIEVYFNHNQAKGKEYLDPYRNIQRTGDNLEAIIIEQINTAKSTL
DIAVQEINLTNLAKAIIDKKKQGVKVRIVIENNYNLPLNQLKNNDGLAILKQVNIPIIDDREDGSKGSGLMHHKFIIIDG
EKIVTGSANFTLSDIHGDFENLETIGNANHILVINSSSLANIFTEEFNYLWGDGVGGKKDSLFGLKKPYRREKIVKIGEN
TIVIKFSPTSQSKSWIESTNGLISHTLKSASNSIDLALFVFSDQDIANTLKNESLQGVKIRALIDPNFAYQYYSEGLDLL
GLALPNKCKYEKNNNPWQQPIETVGIPNLAQGDKLHHKFGIVDNYTIITGSHNWSNAANNLNDETLLIIYNPLIAQHFRR
EFDYLYRDAILGIPSNIQEKIDTEITKCSNN
MVKIISLSLTIISYLLFLNGCQSQVKKLPPLSQDSAIEVYFNHNQAKGKEYLDPYRNIQRTGDNLEAIIIEQINTAKSTL
DIAVQEINLTNLAKAIIDKKKQGVKVRIVIENNYNLPLNQLKNNDGLAILKQVNIPIIDDREDGSKGSGLMHHKFIIIDG
EKIVTGSANFTLSDIHGDFENLETIGNANHILVINSSSLANIFTEEFNYLWGDGVGGKKDSLFGLKKPYRREKIVKIGEN
TIVIKFSPTSQSKSWIESTNGLISHTLKSASNSIDLALFVFSDQDIANTLKNESLQGVKIRALIDPNFAYQYYSEGLDLL
GLALPNKCKYEKNNNPWQQPIETVGIPNLAQGDKLHHKFGIVDNYTIITGSHNWSNAANNLNDETLLIIYNPLIAQHFRR
EFDYLYRDAILGIPSNIQEKIDTEITKCSNN
Nucleotide
Download Length: 1296 bp
>NTDB_id=66929 GM3708_RS09460 WP_066345992.1 2134773..2136068(+) (comA) [Geminocystis sp. NIES-3708]
ATGGTCAAAATTATCTCTTTATCTTTAACTATAATCAGTTATTTATTATTTTTAAATGGTTGTCAAAGTCAAGTTAAAAA
ATTGCCTCCATTATCTCAAGATTCTGCCATAGAAGTTTATTTTAATCACAATCAGGCAAAGGGGAAAGAATATTTAGATC
CTTATCGTAATATTCAACGTACTGGAGATAATTTAGAAGCTATTATTATCGAACAAATAAACACAGCAAAATCAACTTTA
GATATAGCAGTACAAGAGATAAATTTAACAAACTTAGCAAAAGCGATTATAGATAAAAAAAAACAAGGTGTAAAAGTTAG
AATTGTTATAGAAAATAACTATAATTTACCCTTGAATCAATTGAAAAATAATGATGGTTTAGCTATTTTAAAACAAGTCA
ATATTCCCATAATAGATGATAGAGAAGATGGTAGTAAAGGCAGTGGATTAATGCACCATAAGTTTATCATTATTGATGGA
GAAAAAATTGTTACAGGTTCAGCTAATTTTACCCTCAGTGATATTCATGGAGATTTTGAAAATTTAGAAACAATCGGCAA
TGCTAATCATATTCTAGTAATAAATAGCTCTTCATTAGCCAATATTTTTACAGAAGAATTTAACTATCTTTGGGGAGATG
GAGTAGGGGGAAAAAAAGATAGTTTATTTGGTTTAAAAAAGCCTTATCGCCGAGAGAAAATAGTTAAAATAGGAGAAAAC
ACTATAGTTATAAAATTTTCACCTACTTCTCAAAGTAAATCATGGATAGAAAGCACCAACGGTTTAATATCTCATACTCT
CAAATCTGCCAGTAATTCTATTGATTTAGCATTATTTGTTTTTAGCGATCAAGATATAGCAAATACTTTAAAAAATGAAT
CGTTACAAGGAGTAAAAATAAGAGCCTTAATTGATCCTAATTTTGCCTATCAATACTATAGTGAAGGACTAGATTTGTTA
GGATTAGCTTTACCCAATAAATGCAAATATGAAAAGAATAATAATCCTTGGCAACAACCCATCGAAACTGTTGGAATTCC
TAATTTAGCTCAAGGAGACAAATTACATCATAAATTTGGCATTGTTGATAACTATACCATTATCACAGGGTCTCATAATT
GGTCAAATGCGGCGAATAATCTTAATGATGAAACTCTTTTAATAATTTATAATCCATTAATTGCCCAACATTTTCGTCGA
GAATTTGATTACCTTTATCGTGATGCAATTTTAGGTATCCCTTCCAATATTCAAGAAAAAATAGACACTGAAATAACAAA
ATGTTCTAATAATTAG
ATGGTCAAAATTATCTCTTTATCTTTAACTATAATCAGTTATTTATTATTTTTAAATGGTTGTCAAAGTCAAGTTAAAAA
ATTGCCTCCATTATCTCAAGATTCTGCCATAGAAGTTTATTTTAATCACAATCAGGCAAAGGGGAAAGAATATTTAGATC
CTTATCGTAATATTCAACGTACTGGAGATAATTTAGAAGCTATTATTATCGAACAAATAAACACAGCAAAATCAACTTTA
GATATAGCAGTACAAGAGATAAATTTAACAAACTTAGCAAAAGCGATTATAGATAAAAAAAAACAAGGTGTAAAAGTTAG
AATTGTTATAGAAAATAACTATAATTTACCCTTGAATCAATTGAAAAATAATGATGGTTTAGCTATTTTAAAACAAGTCA
ATATTCCCATAATAGATGATAGAGAAGATGGTAGTAAAGGCAGTGGATTAATGCACCATAAGTTTATCATTATTGATGGA
GAAAAAATTGTTACAGGTTCAGCTAATTTTACCCTCAGTGATATTCATGGAGATTTTGAAAATTTAGAAACAATCGGCAA
TGCTAATCATATTCTAGTAATAAATAGCTCTTCATTAGCCAATATTTTTACAGAAGAATTTAACTATCTTTGGGGAGATG
GAGTAGGGGGAAAAAAAGATAGTTTATTTGGTTTAAAAAAGCCTTATCGCCGAGAGAAAATAGTTAAAATAGGAGAAAAC
ACTATAGTTATAAAATTTTCACCTACTTCTCAAAGTAAATCATGGATAGAAAGCACCAACGGTTTAATATCTCATACTCT
CAAATCTGCCAGTAATTCTATTGATTTAGCATTATTTGTTTTTAGCGATCAAGATATAGCAAATACTTTAAAAAATGAAT
CGTTACAAGGAGTAAAAATAAGAGCCTTAATTGATCCTAATTTTGCCTATCAATACTATAGTGAAGGACTAGATTTGTTA
GGATTAGCTTTACCCAATAAATGCAAATATGAAAAGAATAATAATCCTTGGCAACAACCCATCGAAACTGTTGGAATTCC
TAATTTAGCTCAAGGAGACAAATTACATCATAAATTTGGCATTGTTGATAACTATACCATTATCACAGGGTCTCATAATT
GGTCAAATGCGGCGAATAATCTTAATGATGAAACTCTTTTAATAATTTATAATCCATTAATTGCCCAACATTTTCGTCGA
GAATTTGATTACCTTTATCGTGATGCAATTTTAGGTATCCCTTCCAATATTCAAGAAAAAATAGACACTGAAATAACAAA
ATGTTCTAATAATTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comA | Synechocystis sp. PCC 6803 |
47.846 |
100 |
0.49 |