Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE12_RS24840 Genome accession   NZ_CP109017
Coordinates   5589825..5590604 (-) Length   259 a.a.
NCBI ID   WP_030379448.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00670     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5584825..5595604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE12_RS24830 (OIE12_24845) - 5586740..5587492 (+) 753 WP_329138877.1 GNAT family N-acetyltransferase -
  OIE12_RS24835 (OIE12_24850) - 5587611..5589581 (+) 1971 WP_329138879.1 ATP-dependent DNA helicase -
  OIE12_RS24840 (OIE12_24855) dinR/lexA 5589825..5590604 (-) 780 WP_030379448.1 transcriptional repressor LexA Regulator
  OIE12_RS24845 (OIE12_24860) nrdR 5591275..5591907 (+) 633 WP_329138882.1 transcriptional regulator NrdR -
  OIE12_RS24850 (OIE12_24865) - 5592079..5594988 (+) 2910 WP_329138884.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27993.83 Da        Isoelectric Point: 7.0668

>NTDB_id=669280 OIE12_RS24840 WP_030379448.1 5589825..5590604(-) (dinR/lexA) [Streptomyces sp. NBC_00670]
MTTTADSAAITAQDRSQGRLEPVHAMTEVPHPEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAAPVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNAAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=669280 OIE12_RS24840 WP_030379448.1 5589825..5590604(-) (dinR/lexA) [Streptomyces sp. NBC_00670]
GTGACCACCACCGCAGACAGTGCCGCCATCACTGCCCAGGACCGTTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAC
GGAAGTTCCGCACCCCGAGGGACCAAAGAGGTCCCTGCCCGGGCGACCTCCCGGCATCCGGGCGGACAGCTCCGGGCTGA
CCGACCGGCAGCGCCGGGTGATCGAGGTCATCCGGGATTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCCGTGGGCCTGTCCAGCACCTCTTCCGTGGCGCACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGGCCGCGCGCGTACGAGGTGCGCGGCTCCGACCAGGCCGCTCCCGTGCAGCCCACCGACACGGCGGGCA
AGCCGGCCGCGTCGTACGTGCCGCTGGTGGGCCGGATCGCCGCCGGTGGGCCGATCCTGGCCGAGGAGTCCGTGGAGGAC
GTGTTCCCGCTGCCGCGGCAGCTCGTCGGTGACGGTGAACTGTTCGTGCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
GGCGATCTGCGACGGGGACTGGGTCACCGTGCGACGTCAGCCGGTGGCGGAGAACGGGGACATCGTCGCCGCGATGCTGG
AGGGTGAGGCGACGGTGAAGCGGTTCAAGCGTGAGGACGGGCATGTGTGGCTGTTGCCGCACAATGCGGCGTACGAGCCG
ATTCCTGGTGACGATGCGACGATTCTGGGCAAGGTGGTGGCGGTGCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375

Multiple sequence alignment