Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MQC90_RS12175 Genome accession   NZ_CP094361
Coordinates   2336026..2336646 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain NCIB 3610     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2331026..2341646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS12135 ypqE 2332157..2332663 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  MQC90_RS12140 ypqA 2332801..2333220 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  MQC90_RS12145 yppG 2333241..2333618 (-) 378 WP_004398696.1 YppG family protein -
  MQC90_RS12150 yppF 2333806..2333994 (+) 189 WP_003230690.1 YppF family protein -
  MQC90_RS12155 yppE 2334033..2334404 (-) 372 WP_003246080.1 YppE family protein -
  MQC90_RS12160 yppD 2334450..2334695 (-) 246 WP_004398488.1 YppD family protein -
  MQC90_RS12165 sspM 2334894..2334998 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  MQC90_RS12170 yppC 2335023..2335985 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  MQC90_RS12175 recU 2336026..2336646 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MQC90_RS12180 ponA 2336668..2339412 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  MQC90_RS12185 ypoC 2339488..2339982 (-) 495 WP_009967579.1 YpoC family protein -
  MQC90_RS12190 nth 2339979..2340638 (-) 660 WP_009967580.1 endonuclease III -
  MQC90_RS12195 dnaD 2340657..2341355 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=669280 MQC90_RS12175 WP_004399067.1 2336026..2336646(+) (recU) [Bacillus subtilis strain NCIB 3610]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=669280 MQC90_RS12175 WP_004399067.1 2336026..2336646(+) (recU) [Bacillus subtilis strain NCIB 3610]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment