Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   MQC90_RS07975 Genome accession   NZ_CP094361
Coordinates   1517463..1517741 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain NCIB 3610     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1512463..1522741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS07955 - 1513650..1514561 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  MQC90_RS07960 ampS 1514595..1515827 (-) 1233 WP_003232341.1 aminopeptidase -
  MQC90_RS07965 ykpC 1515937..1516071 (-) 135 WP_003238865.1 protein YkpC -
  MQC90_RS07970 mreBH 1516172..1517179 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  MQC90_RS07975 abrB 1517463..1517741 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  MQC90_RS07980 kinC 1517931..1519217 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  MQC90_RS07985 ykqA 1519233..1520066 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  MQC90_RS07990 ktrC 1520129..1520794 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  MQC90_RS07995 ade 1520949..1522682 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=669275 MQC90_RS07975 WP_003244728.1 1517463..1517741(+) (abrB) [Bacillus subtilis strain NCIB 3610]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=669275 MQC90_RS07975 WP_003244728.1 1517463..1517741(+) (abrB) [Bacillus subtilis strain NCIB 3610]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment