Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   MQC90_RS06245 Genome accession   NZ_CP094361
Coordinates   1206223..1207176 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis strain NCIB 3610     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201223..1212176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS06220 argF 1203055..1204014 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  MQC90_RS06225 yjzC 1204100..1204279 (+) 180 WP_003245356.1 YjzC family protein -
  MQC90_RS06230 yjzD 1204325..1204510 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  MQC90_RS06235 - 1204759..1205493 (+) 735 WP_003245223.1 hypothetical protein -
  MQC90_RS06240 - 1205575..1206132 (+) 558 WP_003232974.1 hypothetical protein -
  MQC90_RS06245 med 1206223..1207176 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  MQC90_RS06250 comZ 1207191..1207382 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  MQC90_RS06255 yjzB 1207412..1207651 (-) 240 WP_003232972.1 spore coat protein YjzB -
  MQC90_RS06260 fabH 1207816..1208754 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  MQC90_RS06265 fabF 1208777..1210018 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  MQC90_RS06270 yjaZ 1210094..1210879 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  MQC90_RS06275 appD 1211071..1212057 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=669264 MQC90_RS06245 WP_003245494.1 1206223..1207176(+) (med) [Bacillus subtilis strain NCIB 3610]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=669264 MQC90_RS06245 WP_003245494.1 1206223..1207176(+) (med) [Bacillus subtilis strain NCIB 3610]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment