Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MQC90_RS05790 Genome accession   NZ_CP094361
Coordinates   1116703..1117281 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain NCIB 3610     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111703..1122281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQC90_RS05770 hemAT 1112214..1113512 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  MQC90_RS05775 yhfW 1113651..1115180 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  MQC90_RS05780 yhxC 1115292..1116149 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  MQC90_RS05785 yhzC 1116177..1116410 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MQC90_RS05790 comK 1116703..1117281 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  MQC90_RS05795 yhxD 1117328..1118227 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  MQC90_RS05800 yhjA 1118444..1118713 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  MQC90_RS05805 yhjB 1118756..1120225 (-) 1470 WP_003233134.1 sodium:solute symporter -
  MQC90_RS05810 yhjC 1120222..1120422 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MQC90_RS05815 - 1120630..1120992 (-) 363 WP_003233132.1 hypothetical protein -
  MQC90_RS05820 yhjE 1121144..1121767 (+) 624 WP_010886465.1 VTT domain-containing protein -
  MQC90_RS05825 lepB 1121769..1122275 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=669261 MQC90_RS05790 WP_003245329.1 1116703..1117281(+) (comK) [Bacillus subtilis strain NCIB 3610]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=669261 MQC90_RS05790 WP_003245329.1 1116703..1117281(+) (comK) [Bacillus subtilis strain NCIB 3610]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment