Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | GM3708_RS04150 | Genome accession | NZ_AP014815 |
| Coordinates | 946358..946729 (-) | Length | 123 a.a. |
| NCBI ID | WP_066344359.1 | Uniprot ID | A0A0D6AD60 |
| Organism | Geminocystis sp. NIES-3708 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 941358..951729
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GM3708_RS04130 (GM3708_846) | - | 941934..943961 (+) | 2028 | WP_066344352.1 | DICT sensory domain-containing protein | - |
| GM3708_RS04135 (GM3708_847) | - | 944223..944471 (+) | 249 | WP_071827578.1 | hypothetical protein | - |
| GM3708_RS04140 (GM3708_848) | - | 944570..944890 (+) | 321 | WP_066344355.1 | 2Fe-2S iron-sulfur cluster-binding protein | - |
| GM3708_RS04145 (GM3708_849) | trmFO | 944948..946273 (-) | 1326 | WP_066344357.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| GM3708_RS04150 (GM3708_850) | pilH | 946358..946729 (-) | 372 | WP_066344359.1 | PleD family two-component system response regulator | Machinery gene |
| GM3708_RS04155 (GM3708_851) | thiL | 946799..947788 (-) | 990 | WP_066344361.1 | thiamine-phosphate kinase | - |
| GM3708_RS04160 (GM3708_852) | - | 947933..948607 (+) | 675 | WP_158505847.1 | 4'-phosphopantetheinyl transferase superfamily protein | - |
| GM3708_RS04165 (GM3708_853) | - | 948642..948926 (+) | 285 | WP_066344363.1 | DUF427 domain-containing protein | - |
| GM3708_RS04170 (GM3708_854) | - | 949012..950187 (+) | 1176 | WP_082713992.1 | DUF58 domain-containing protein | - |
Sequence
Protein
Download Length: 123 a.a. Molecular weight: 14143.61 Da Isoelectric Point: 5.6798
>NTDB_id=66924 GM3708_RS04150 WP_066344359.1 946358..946729(-) (pilH) [Geminocystis sp. NIES-3708]
MIKILVVDDNHTPREVICEALKQFNIQVKEAVNGVEAIKILEEEQFNLVITDVVMPEMNGYELCRWIKTNPATEKVPVII
CSTKGEDFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNV
MIKILVVDDNHTPREVICEALKQFNIQVKEAVNGVEAIKILEEEQFNLVITDVVMPEMNGYELCRWIKTNPATEKVPVII
CSTKGEDFDIHWATKQGADAYIIKPFKTMELLKTIKYLLKHNV
Nucleotide
Download Length: 372 bp
>NTDB_id=66924 GM3708_RS04150 WP_066344359.1 946358..946729(-) (pilH) [Geminocystis sp. NIES-3708]
ATGATTAAAATTTTAGTTGTTGATGATAATCATACTCCCAGAGAAGTGATCTGCGAAGCACTGAAGCAATTTAATATTCA
GGTAAAAGAAGCCGTAAATGGAGTAGAGGCAATAAAAATTTTGGAAGAAGAACAATTTAATCTTGTTATTACAGACGTAG
TAATGCCTGAAATGAATGGCTATGAATTGTGTCGTTGGATAAAAACTAATCCCGCTACAGAAAAAGTACCCGTAATTATT
TGCTCAACTAAAGGAGAAGATTTTGACATTCATTGGGCGACAAAACAAGGGGCTGATGCTTATATTATTAAGCCTTTCAA
AACAATGGAATTACTTAAAACTATCAAGTATTTATTAAAGCACAACGTATAA
ATGATTAAAATTTTAGTTGTTGATGATAATCATACTCCCAGAGAAGTGATCTGCGAAGCACTGAAGCAATTTAATATTCA
GGTAAAAGAAGCCGTAAATGGAGTAGAGGCAATAAAAATTTTGGAAGAAGAACAATTTAATCTTGTTATTACAGACGTAG
TAATGCCTGAAATGAATGGCTATGAATTGTGTCGTTGGATAAAAACTAATCCCGCTACAGAAAAAGTACCCGTAATTATT
TGCTCAACTAAAGGAGAAGATTTTGACATTCATTGGGCGACAAAACAAGGGGCTGATGCTTATATTATTAAGCCTTTCAA
AACAATGGAATTACTTAAAACTATCAAGTATTTATTAAAGCACAACGTATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
52.893 |
98.374 |
0.52 |