Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MQE35_RS10690 Genome accession   NZ_CP094358
Coordinates   2544614..2545975 (-) Length   453 a.a.
NCBI ID   WP_255841366.1    Uniprot ID   A0A9E6ZL90
Organism   Abyssalbus ytuae strain MT3330     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2539614..2550975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQE35_RS10670 (MQE35_10655) - 2540790..2541461 (+) 672 WP_255841362.1 hypothetical protein -
  MQE35_RS10675 (MQE35_10660) - 2541721..2542485 (+) 765 WP_255841363.1 exodeoxyribonuclease III -
  MQE35_RS10680 (MQE35_10665) - 2542498..2543457 (+) 960 WP_255841364.1 OmpA family protein -
  MQE35_RS10685 (MQE35_10670) - 2543574..2544617 (+) 1044 WP_255841365.1 aldo/keto reductase -
  MQE35_RS10690 (MQE35_10675) radA 2544614..2545975 (-) 1362 WP_255841366.1 DNA repair protein RadA Machinery gene
  MQE35_RS10695 (MQE35_10680) - 2546056..2546505 (-) 450 WP_255841367.1 GNAT family N-acetyltransferase -
  MQE35_RS10700 (MQE35_10685) - 2546569..2547726 (-) 1158 WP_255841368.1 alpha/beta hydrolase -
  MQE35_RS10705 (MQE35_10690) - 2547767..2548717 (-) 951 WP_255841369.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MQE35_RS10710 (MQE35_10695) panD 2548727..2549077 (-) 351 WP_255841370.1 aspartate 1-decarboxylase -
  MQE35_RS10715 (MQE35_10700) panC 2549091..2549939 (-) 849 WP_255841371.1 pantoate--beta-alanine ligase -
  MQE35_RS10720 (MQE35_10705) - 2550046..2550855 (+) 810 WP_255841372.1 glycogen/starch synthase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49945.43 Da        Isoelectric Point: 6.6100

>NTDB_id=669235 MQE35_RS10690 WP_255841366.1 2544614..2545975(-) (radA) [Abyssalbus ytuae strain MT3330]
MAKVKTSFFCQNCGTQFTKWQGQCSACKEWNTIVEEIIQKEEKKSWKSPDMSSKRTSKPLKINEIDGSQEMRITSGDNEF
NRVLGGGIVPGSVTLLGGEPGIGKSTLLLQIALQLPVKTLYVSGEESQKQIKMRAERIHPNSENCYILTETKTQNIFKQA
ENINPDILVIDSIQTLHSDYIESSAGSISQIRECTSELIKFAKESGTPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHVYRILRALKNRFGSTAELGIYEMQGSGLREVSNPSEILISNHDQDLSGTAIAATLEGMRPLMIEIQALVSTAVYGTP
QRSTTGYNVKRLNMLLAVLEKRAGFKLGAKDVFLNITGGITVDDPAIDLAVIAAILSSNEDIPIEKDICFAAEIGLAGEI
RPVQRVDQRIMEAEKLGFATIFVSKHNKISVKNPQIQLKLVSRIEDVVRELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=669235 MQE35_RS10690 WP_255841366.1 2544614..2545975(-) (radA) [Abyssalbus ytuae strain MT3330]
ATGGCCAAAGTAAAAACTTCTTTTTTCTGTCAAAACTGTGGAACCCAATTTACAAAATGGCAGGGGCAGTGTTCTGCCTG
CAAGGAATGGAACACCATTGTTGAAGAAATCATTCAAAAAGAAGAAAAAAAAAGCTGGAAGTCTCCTGATATGTCATCAA
AAAGAACGTCAAAACCATTAAAAATTAATGAAATTGATGGTTCACAGGAAATGCGGATTACTTCAGGCGACAATGAATTT
AACCGGGTACTCGGCGGAGGCATTGTTCCCGGATCAGTTACCTTGCTAGGGGGTGAACCAGGCATAGGCAAAAGCACCCT
TTTATTACAAATTGCCCTTCAACTCCCTGTAAAAACCCTGTATGTTTCTGGTGAAGAAAGCCAGAAGCAAATAAAAATGC
GGGCAGAACGCATACATCCGAATAGTGAAAATTGCTATATCCTAACCGAAACTAAAACCCAAAACATTTTTAAACAGGCA
GAAAATATCAATCCCGATATCCTTGTAATTGATTCTATTCAAACGCTGCATTCTGATTATATTGAATCATCTGCAGGGAG
TATTTCTCAAATACGTGAATGTACTTCAGAACTGATCAAATTTGCTAAAGAGTCCGGTACTCCGGTGATTCTTATAGGTC
ATATTACAAAAGACGGAAACATAGCCGGGCCCAAAATCCTGGAACATATGGTTGATACGGTACTTCAGTTTGAGGGAGAC
AGAAATCATGTTTACAGAATATTAAGAGCTTTAAAAAACCGGTTTGGCTCTACTGCGGAATTAGGAATTTATGAAATGCA
GGGAAGCGGACTAAGAGAAGTGAGCAACCCGTCTGAGATCCTTATTTCAAACCACGATCAGGATTTAAGCGGAACAGCCA
TTGCTGCTACACTTGAAGGAATGCGTCCTCTTATGATAGAAATCCAGGCTCTTGTAAGTACTGCTGTTTACGGAACACCT
CAACGAAGCACTACGGGTTACAACGTAAAAAGACTAAATATGCTTTTGGCTGTTTTAGAAAAAAGAGCAGGGTTTAAGCT
TGGTGCAAAGGATGTTTTTCTCAATATAACGGGAGGAATAACAGTAGATGACCCTGCAATTGACCTGGCCGTGATTGCAG
CTATACTTTCCAGCAATGAAGATATTCCTATAGAAAAAGATATATGCTTTGCAGCCGAAATAGGCTTAGCCGGCGAAATA
CGGCCTGTACAACGAGTAGATCAACGTATTATGGAAGCCGAAAAATTAGGCTTTGCTACCATTTTTGTTTCCAAACACAA
TAAAATTTCCGTAAAAAACCCACAAATTCAGTTAAAACTTGTTTCACGTATTGAAGATGTGGTCAGAGAGTTATTTGGTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

AAA domain (AAA_25)

(83-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

49.011

100

0.492
  radA Streptococcus mitis SK321

49.011

100

0.492
  radA Streptococcus mitis NCTC 12261

49.011

100

0.492
  radA Streptococcus pneumoniae TIGR4

49.011

100

0.492
  radA Streptococcus pneumoniae D39

49.011

100

0.492
  radA Streptococcus pneumoniae R6

49.011

100

0.492
  radA Bacillus subtilis subsp. subtilis str. 168

47.702

100

0.481

Multiple sequence alignment