Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG257_RS36295 Genome accession   NZ_CP109013
Coordinates   8348983..8349984 (-) Length   333 a.a.
NCBI ID   WP_329215534.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00683     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8343983..8354984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG257_RS36285 (OG257_36295) - 8344503..8346842 (-) 2340 WP_329214584.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OG257_RS36290 (OG257_36300) - 8346906..8348840 (-) 1935 WP_329214586.1 cellulase family glycosylhydrolase -
  OG257_RS36295 (OG257_36305) cytR 8348983..8349984 (-) 1002 WP_329215534.1 LacI family DNA-binding transcriptional regulator Regulator
  OG257_RS36300 (OG257_36310) - 8350098..8350925 (-) 828 WP_329214588.1 carbohydrate ABC transporter permease -
  OG257_RS36305 (OG257_36315) - 8350939..8351880 (-) 942 WP_329214590.1 sugar ABC transporter permease -
  OG257_RS36310 (OG257_36320) - 8351913..8353205 (-) 1293 WP_329214592.1 ABC transporter substrate-binding protein -
  OG257_RS36315 (OG257_36325) - 8353465..8354571 (-) 1107 WP_329214595.1 DUF4037 domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34862.71 Da        Isoelectric Point: 6.7006

>NTDB_id=669218 OG257_RS36295 WP_329215534.1 8348983..8349984(-) (cytR) [Streptomyces sp. NBC_00683]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLAAAAELGWSPSASASALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMAQESALYERLVAEGRIDGAVLTDARADDPRPQLLRGLGLPAVLLGTPDPSSPVPGVGLGQQ
DAGVREAVAHLLELGHRRFAYVAGPAELVHTGLRRAAFESALAEAGLRPVAVRHTDFTERAAVAVTEELLALPDRPTALV
FTNDSMAVCGIGTAQRGGLRVPEDVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARELLVRCGEDVPPPVLDGRPSL
VVRESTGPAPSAH

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=669218 OG257_RS36295 WP_329215534.1 8348983..8349984(-) (cytR) [Streptomyces sp. NBC_00683]
GTGGCCGCCGCGGCCGGGGTCTCCACCGCCGCGGTGTCCCAGGCCGTCAACGGCACCGGCCGGATCTCGGAGGCGACCCG
CCGCCGGGTTCTGGCCGCGGCCGCCGAACTGGGCTGGTCGCCCAGCGCGTCGGCGTCCGCGCTGCGCCGGGCCCGTACCC
GTACGATCGCGCTCGTCGTCCGCCGCCCCACGGACGTGCTCGGCGCCGACCCGCACTTCAGCGAGCTGATCACCGGTCTG
GAGGGCGAACTGGCCCCCCGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGGCCCAGGAGAGCGCGCTGTACGA
ACGACTGGTCGCGGAAGGCCGGATCGACGGTGCGGTGCTGACCGACGCGCGGGCGGACGACCCGCGCCCCCAACTGCTGC
GGGGCCTCGGGCTGCCCGCCGTCCTGCTCGGCACGCCGGATCCCTCGTCGCCGGTGCCCGGCGTCGGCCTCGGGCAGCAG
GATGCCGGTGTCCGTGAGGCGGTCGCGCACCTGCTGGAGCTCGGCCACCGGCGTTTCGCGTACGTCGCGGGTCCGGCCGA
GCTGGTGCACACCGGGCTGCGCCGGGCCGCGTTCGAGAGCGCCCTCGCCGAAGCGGGGCTGCGGCCCGTCGCCGTACGGC
ACACCGATTTCACGGAGCGGGCGGCCGTCGCCGTCACCGAGGAACTGCTCGCGCTCCCCGACCGGCCGACCGCGCTGGTG
TTCACCAACGACTCCATGGCCGTGTGCGGTATCGGTACGGCCCAGCGCGGCGGGCTCCGGGTGCCCGAAGACGTGTCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACGACCGTGGACCAGCAGGTGCAACGGGTCG
GTGCGGCCGCCGCCCGCGAGCTGCTCGTCCGGTGCGGCGAGGACGTGCCCCCGCCGGTCCTCGACGGACGCCCGAGCCTG
GTCGTACGGGAGTCCACCGGTCCCGCACCGTCCGCGCACTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.036

100

0.36

Multiple sequence alignment