Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG257_RS34520 Genome accession   NZ_CP109013
Coordinates   7929338..7930354 (+) Length   338 a.a.
NCBI ID   WP_329213934.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00683     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7924338..7935354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG257_RS34500 (OG257_34505) - 7924528..7925727 (-) 1200 WP_329213926.1 sialidase family protein -
  OG257_RS34505 (OG257_34510) - 7925790..7926680 (-) 891 WP_329213928.1 carbohydrate ABC transporter permease -
  OG257_RS34510 (OG257_34515) - 7926683..7927591 (-) 909 WP_329213930.1 sugar ABC transporter permease -
  OG257_RS34515 (OG257_34520) - 7927701..7929107 (-) 1407 WP_329213932.1 extracellular solute-binding protein -
  OG257_RS34520 (OG257_34525) cytR 7929338..7930354 (+) 1017 WP_329213934.1 LacI family DNA-binding transcriptional regulator Regulator
  OG257_RS34525 (OG257_34530) - 7930731..7930895 (+) 165 WP_329213936.1 hypothetical protein -
  OG257_RS34530 (OG257_34535) - 7930976..7931143 (-) 168 WP_329213938.1 hypothetical protein -
  OG257_RS34535 (OG257_34540) - 7931349..7933079 (+) 1731 WP_329213939.1 FUSC family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36193.36 Da        Isoelectric Point: 6.4316

>NTDB_id=669216 OG257_RS34520 WP_329213934.1 7929338..7930354(+) (cytR) [Streptomyces sp. NBC_00683]
MAGSRLKDVAERAGVSIKTVSNVVRGEAKVADRTRERVLHAIAELDYQPNASARHLRTGRSGIIALAVPELVSPYFAELA
AEVIAAAKKRSCTVLIEDTGGDPAEELRIACGLSDPLIDGVLLSPLRLDEQVLGARERRVPLVLLGERSYEIPADHVLID
NAAAAREATDHLLSLGRRRVAAIGQPAGLAHATTVQRMHGYLTALHAAGVPHDPRLVPDTREFTRRAGAEAMHALLALDD
PPDAVFCFNDLLASGALRAAHDQGVRVPQDLAMVGFDDVEESRYSVPSLTTVAPDKRGIAELAVDALMRRIDAGAMAPHS
RLTAGFELVVRESTRPAL

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=669216 OG257_RS34520 WP_329213934.1 7929338..7930354(+) (cytR) [Streptomyces sp. NBC_00683]
GTGGCAGGCAGTCGCCTGAAGGACGTCGCGGAGCGCGCCGGGGTGTCGATCAAGACCGTGTCGAACGTCGTCCGCGGTGA
GGCGAAAGTGGCCGACAGGACCCGGGAGCGGGTCCTGCACGCCATCGCGGAGCTGGACTACCAGCCGAACGCCTCCGCCC
GCCACTTGCGCACCGGACGCAGCGGCATCATCGCGCTCGCCGTCCCGGAACTCGTGTCGCCCTACTTCGCGGAACTGGCC
GCGGAGGTCATCGCAGCCGCGAAGAAGCGGAGCTGCACCGTACTCATCGAGGACACCGGCGGCGACCCTGCCGAGGAGCT
GCGCATCGCCTGCGGGCTCAGCGATCCGCTCATCGACGGGGTGCTGCTCAGCCCGCTCCGGCTCGACGAACAGGTTCTCG
GCGCCCGTGAACGGCGTGTCCCACTGGTCCTGTTGGGCGAGCGGTCCTACGAGATCCCCGCCGACCATGTACTGATCGAC
AACGCGGCCGCCGCCCGCGAGGCCACCGACCACCTGCTCTCCCTCGGCCGACGCCGTGTCGCTGCCATCGGGCAGCCCGC
CGGACTCGCCCACGCGACGACGGTCCAGCGCATGCACGGCTACCTGACCGCGCTGCACGCGGCAGGGGTCCCGCACGACC
CCCGACTCGTCCCGGACACCCGGGAGTTCACACGCCGAGCGGGGGCGGAGGCGATGCATGCGCTGCTCGCCCTGGACGAC
CCGCCGGACGCCGTCTTCTGCTTCAACGACCTGCTGGCCTCGGGCGCGCTGCGCGCAGCGCACGACCAGGGCGTACGGGT
GCCCCAGGACCTGGCCATGGTCGGCTTCGACGACGTGGAGGAGTCCCGCTACAGCGTGCCGTCCCTGACCACCGTCGCTC
CCGACAAGCGGGGCATCGCCGAGCTGGCCGTGGACGCGCTGATGCGCAGGATCGACGCGGGCGCGATGGCGCCACACTCG
CGACTCACCGCGGGGTTCGAGCTGGTGGTACGGGAGAGCACCCGCCCGGCGCTCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(6-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.538

98.521

0.37
  cytR Vibrio parahaemolyticus RIMD 2210633

36.937

98.521

0.364

Multiple sequence alignment