Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MRY17_RS22280 Genome accession   NZ_CP094351
Coordinates   4992554..4993921 (-) Length   455 a.a.
NCBI ID   WP_032884669.1    Uniprot ID   A0A031J688
Organism   Pseudomonas orientalis strain YB-76     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4987554..4998921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRY17_RS22265 (MRY17_22265) yjiA 4988862..4989824 (-) 963 WP_243352870.1 GTPase -
  MRY17_RS22270 (MRY17_22270) - 4989979..4990176 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  MRY17_RS22275 (MRY17_22275) - 4990192..4992258 (-) 2067 WP_057724970.1 carbon starvation CstA family protein -
  MRY17_RS22280 (MRY17_22280) radA 4992554..4993921 (-) 1368 WP_032884669.1 DNA repair protein RadA Machinery gene
  MRY17_RS22285 (MRY17_22285) - 4993957..4994505 (-) 549 WP_243352871.1 ankyrin repeat domain-containing protein -
  MRY17_RS22290 (MRY17_22290) katB 4994644..4996185 (-) 1542 WP_243352872.1 catalase KatB -
  MRY17_RS22295 (MRY17_22295) mscL 4996473..4996889 (+) 417 WP_191953239.1 large-conductance mechanosensitive channel protein MscL -
  MRY17_RS22300 (MRY17_22300) - 4996928..4997704 (-) 777 WP_181284583.1 ferredoxin--NADP reductase -
  MRY17_RS22305 (MRY17_22305) - 4998134..4998844 (+) 711 WP_191953240.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=669198 MRY17_RS22280 WP_032884669.1 4992554..4993921(-) (radA) [Pseudomonas orientalis strain YB-76]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=669198 MRY17_RS22280 WP_032884669.1 4992554..4993921(-) (radA) [Pseudomonas orientalis strain YB-76]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCGGGCCAGTGCGGCGAGTG
CGGTGCGTGGAACACCCTGACTGAAACCATGATTGAAAGCGGTGGCGCCGCAGCCCCCACCGGCCGCGCCGGCTGGACCG
GGCAACAAGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAGATCCCGCGTTTCTCCACGGCCTCCGGCGAGCTG
GACCGGGTATTGGGCGGTGGCCTGGTGGACGGCTCGGTTGTGCTGATCGGCGGCGACCCCGGCATCGGTAAATCCACGAT
CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGCGAAGAATCCCAGCAGCAAGTGG
CCATGCGCGCCCGCCGCCTGGGCCTGCCCCAAGACCAACTGCGGGTCATGACCGAAACCTGCATCGAAAGCATCATCGCC
ACGGCGCGCATCGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCAGCGCC
TGGCGGCGTGTCCCAGGTGCGTGAAAGCGCGGCGCTGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGTCACGTGACCAAGGAAGGCGCGCTGGCCGGGCCGCGCGTGCTGGAGCACATGGTGGATACCGTGCTGTATTTCGAG
GGTGAATCCGATGGCCGCCTCCGGTTGCTGCGGGCGGTGAAAAACCGCTTTGGCGCGGTTAACGAGTTGGGTGTGTTTGC
CATGACTGACCGGGGGCTGAAAGAAGTCTCCAACCCCTCGGCGATCTTTCTCACCCGCGCCCAGGAAGAAGTCCCAGGCA
GCGTGGTAATGGCGACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCATCTGGCC
AACCCGCGACGGGTCACCCTCGGCCTGGATCAGAACCGCCTGGCCATGCTGTTGGCGGTATTGCATCGCCATGGCGGCAT
TCCGACTCACGATCAGGACGTCTTCCTCAATGTGGTGGGCGGGGTCAAGGTGTTGGAGACCGCGTCCGACCTGGCGTTGA
TGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCCTTGCCCCATGACTTGCTGGTGTTTGGCGAGGTCGGGCTGTCGGGC
GAAGTGCGCCCGGTGCCCAGCGGCCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCACCCGCCTGGAACAGGCGTTGGATGCACTGT
TCGAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47

Multiple sequence alignment