Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MRZ06_RS10700 Genome accession   NZ_CP094348
Coordinates   2032954..2034315 (-) Length   453 a.a.
NCBI ID   WP_243365789.1    Uniprot ID   -
Organism   Macrococcus armenti strain CCM 2609     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2027954..2039315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRZ06_RS10675 (MRZ06_10670) cysE 2028383..2029030 (-) 648 WP_243367387.1 serine O-acetyltransferase -
  MRZ06_RS10680 (MRZ06_10675) gltX 2029271..2030725 (-) 1455 WP_243365785.1 glutamate--tRNA ligase -
  MRZ06_RS10685 (MRZ06_10680) ispF 2030743..2031219 (-) 477 WP_243365786.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MRZ06_RS10690 (MRZ06_10685) ispD 2031216..2031890 (-) 675 WP_341481984.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MRZ06_RS10695 (MRZ06_10690) - 2031892..2032941 (-) 1050 WP_243365788.1 PIN/TRAM domain-containing protein -
  MRZ06_RS10700 (MRZ06_10695) radA 2032954..2034315 (-) 1362 WP_243365789.1 DNA repair protein RadA Machinery gene
  MRZ06_RS10705 (MRZ06_10700) - 2034419..2036842 (-) 2424 WP_243365790.1 ATP-dependent Clp protease ATP-binding subunit -
  MRZ06_RS10710 (MRZ06_10705) - 2036854..2037861 (-) 1008 WP_243365791.1 protein arginine kinase -
  MRZ06_RS10715 (MRZ06_10710) - 2037851..2038237 (-) 387 WP_243365792.1 UvrB/UvrC motif-containing protein -
  MRZ06_RS10720 (MRZ06_10715) - 2038249..2038704 (-) 456 WP_243365793.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50210.71 Da        Isoelectric Point: 7.4631

>NTDB_id=669179 MRZ06_RS10700 WP_243365789.1 2032954..2034315(-) (radA) [Macrococcus armenti strain CCM 2609]
MAKVKSTFECMACGYQSPKWMGKCPNCGAWNQMEEVIEHKQKGPKNAISESNSNNKVEKLKNITKESVPRDHTQMKELDR
VLGGGIVPGSLILIGGDPGIGKSTLLLQVCAILSQQHPVLYISGEESVRQTKLRADRLNEDAGELDVYAETNLQIIHETV
KKTKPKFLVIDSIQTIFHPEVTSAPGSVSQVRECTQELMRIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGD
THHSYRVLRAVKNRFGSTNEMGIFEMKNTGLSEVLNPSEMFLEERTKNVAGSTIVATMEGTRPLLVEVQSLVTPTSFHNP
RRMASGVDHNRLNLLMAVLEKKQGYLLQQQDAYVKVAGGVKLDEPAVDLSIIISIASSYNDKPTRGDDCFIGEVGLTGEV
RRVARIEQRVQEAEKLGFKRVIIPKNNIGGWDFPGNIEVVGVTNINEALRFAF

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=669179 MRZ06_RS10700 WP_243365789.1 2032954..2034315(-) (radA) [Macrococcus armenti strain CCM 2609]
TTGGCAAAGGTAAAAAGTACATTTGAATGTATGGCATGTGGCTACCAGTCACCGAAATGGATGGGAAAGTGTCCAAATTG
TGGTGCATGGAATCAAATGGAAGAAGTAATTGAGCATAAACAGAAAGGCCCTAAAAATGCGATTTCTGAATCCAATAGTA
ATAATAAAGTTGAAAAACTAAAAAATATTACGAAAGAAAGCGTACCTCGTGATCACACACAAATGAAAGAGCTGGATCGC
GTACTCGGTGGTGGCATTGTCCCTGGGTCTTTAATCCTTATCGGCGGAGATCCTGGTATCGGGAAATCGACATTGCTGCT
GCAAGTGTGTGCCATATTATCACAGCAACATCCGGTGTTATATATATCGGGTGAGGAATCTGTCAGACAGACGAAATTGC
GTGCAGATAGATTGAATGAAGATGCTGGAGAGCTTGATGTGTATGCTGAGACGAACCTTCAGATTATCCACGAAACCGTT
AAGAAAACGAAACCTAAATTTCTTGTTATCGACTCTATCCAAACTATATTTCACCCAGAAGTGACGAGTGCACCAGGTTC
TGTATCTCAAGTAAGAGAATGTACGCAGGAATTGATGCGTATTGCAAAACAGATGAACATTGCAACGTTTATCGTTGGAC
ACGTAACAAAAGAAGGACAAATCGCAGGCCCGAGATTATTGGAGCATATGGTAGATACCGTATTATACTTTGAAGGTGAT
ACGCACCATAGTTATCGTGTGTTACGTGCTGTTAAAAACCGTTTCGGCTCAACAAATGAAATGGGTATATTCGAAATGAA
AAACACAGGACTTTCTGAAGTGCTGAATCCTTCTGAAATGTTTCTGGAAGAACGTACGAAGAATGTTGCGGGTTCAACGA
TTGTCGCAACGATGGAAGGGACAAGACCTCTTCTTGTTGAAGTGCAGTCACTTGTAACGCCGACTTCATTTCATAACCCG
AGACGAATGGCTTCAGGAGTCGATCACAATCGACTGAACTTATTAATGGCAGTTCTCGAGAAAAAACAAGGGTATTTATT
ACAGCAGCAGGATGCATATGTAAAAGTTGCAGGTGGCGTGAAACTGGATGAACCAGCTGTAGATTTAAGCATTATTATTA
GCATTGCATCTAGTTATAACGATAAGCCAACGCGTGGAGATGATTGTTTTATCGGAGAGGTAGGTTTAACAGGAGAAGTA
CGTCGTGTCGCACGTATTGAACAACGTGTACAGGAAGCCGAAAAGTTAGGCTTTAAACGCGTCATCATTCCGAAAAATAA
TATTGGCGGTTGGGATTTCCCGGGGAATATTGAAGTTGTCGGTGTGACAAATATAAACGAAGCATTAAGATTCGCATTTT
AA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(343-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.447

100

0.669
  radA Streptococcus pneumoniae Rx1

61.674

100

0.618
  radA Streptococcus pneumoniae D39

61.674

100

0.618
  radA Streptococcus pneumoniae R6

61.674

100

0.618
  radA Streptococcus pneumoniae TIGR4

61.674

100

0.618
  radA Streptococcus mitis SK321

61.674

100

0.618
  radA Streptococcus mitis NCTC 12261

61.674

100

0.618

Multiple sequence alignment