Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PM1_RS18870 Genome accession   NZ_CP094343
Coordinates   4316097..4316642 (-) Length   181 a.a.
NCBI ID   WP_009619285.1    Uniprot ID   -
Organism   Pseudomonas sp. M1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4311097..4321642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS18860 (MRY70_18860) - 4314781..4315323 (-) 543 WP_009619288.1 PilX N-terminal domain-containing pilus assembly protein -
  PM1_RS18865 (MRY70_18865) - 4315320..4316096 (-) 777 WP_009619287.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  PM1_RS18870 (MRY70_18870) pilV 4316097..4316642 (-) 546 WP_009619285.1 type IV pilus modification protein PilV Machinery gene
  PM1_RS18875 (MRY70_18875) - 4316639..4317142 (-) 504 WP_009619284.1 GspH/FimT family pseudopilin -
  PM1_RS18880 (MRY70_18880) - 4317619..4318968 (-) 1350 WP_009619283.1 MFS transporter -
  PM1_RS18885 (MRY70_18885) - 4319147..4319989 (-) 843 WP_009619282.1 IclR family transcriptional regulator C-terminal domain-containing protein -
  PM1_RS18890 (MRY70_18890) zapE 4320228..4321298 (-) 1071 WP_009619281.1 cell division protein ZapE -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 18948.63 Da        Isoelectric Point: 5.1557

>NTDB_id=669094 PM1_RS18870 WP_009619285.1 4316097..4316642(-) (pilV) [Pseudomonas sp. M1]
MTRRGLAGFSLIEVLVALLVICVGVLGMLAMQGRAIAYSQDMAVRGTAAALADELMETLRTDLYSAQDAGTPLTPPASSD
YYKATGRAFPAAPSSCASLASLSASQRLGCWAQRVQQALPDAASLMSSDFHICRSNGASTCSGTGSAIEIQLAWRVKSGE
CLEASPGSDPTICHYVLREEP

Nucleotide


Download         Length: 546 bp        

>NTDB_id=669094 PM1_RS18870 WP_009619285.1 4316097..4316642(-) (pilV) [Pseudomonas sp. M1]
ATGACGCGCCGTGGCCTGGCCGGCTTCAGCCTGATCGAAGTGCTGGTGGCGCTGCTGGTGATCTGCGTCGGCGTGCTGGG
CATGCTCGCCATGCAGGGCAGGGCGATCGCCTATTCCCAGGACATGGCGGTGCGCGGCACGGCGGCAGCCCTGGCCGACG
AGCTGATGGAGACCCTCCGCACCGACCTCTATTCCGCCCAGGACGCCGGCACGCCGCTGACCCCGCCGGCCAGCTCCGAC
TACTACAAGGCCACCGGCAGAGCCTTCCCCGCAGCACCGAGCAGTTGTGCCTCGCTCGCTTCGCTGAGCGCCTCGCAGCG
CCTGGGCTGCTGGGCGCAGCGGGTGCAGCAGGCGCTGCCCGATGCCGCCAGCCTGATGAGCAGCGACTTCCACATCTGTC
GCAGCAACGGCGCCAGCACCTGCAGCGGCACCGGCTCGGCCATCGAGATCCAGCTGGCCTGGCGGGTGAAGTCCGGCGAG
TGCCTGGAGGCCAGCCCCGGCAGCGACCCGACCATCTGCCACTACGTGCTGCGCGAGGAGCCCTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

48.603

98.895

0.481

Multiple sequence alignment