Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PM1_RS03180 Genome accession   NZ_CP094343
Coordinates   731975..733348 (+) Length   457 a.a.
NCBI ID   WP_009613141.1    Uniprot ID   -
Organism   Pseudomonas sp. M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 726975..738348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PM1_RS03155 (MRY70_03155) - 728176..728952 (+) 777 WP_009613152.1 ferredoxin--NADP reductase -
  PM1_RS03160 (MRY70_03160) - 729141..730694 (+) 1554 WP_009613147.1 TerC family protein -
  PM1_RS03165 (MRY70_03165) mscL 730712..731125 (-) 414 WP_009613146.1 large-conductance mechanosensitive channel protein MscL -
  PM1_RS03170 (MRY70_03170) - 731317..731559 (+) 243 WP_009613144.1 YdcH family protein -
  PM1_RS03175 (MRY70_03175) - 731637..731879 (+) 243 WP_009613142.1 hypothetical protein -
  PM1_RS03180 (MRY70_03180) radA 731975..733348 (+) 1374 WP_009613141.1 DNA repair protein RadA Machinery gene
  PM1_RS03185 (MRY70_03185) - 734496..734867 (-) 372 WP_009613140.1 PilZ domain-containing protein -
  PM1_RS03190 (MRY70_03190) - 735286..737352 (+) 2067 WP_009613139.1 carbon starvation CstA family protein -
  PM1_RS03195 (MRY70_03195) - 737368..737571 (+) 204 WP_009613138.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48893.28 Da        Isoelectric Point: 6.8983

>NTDB_id=669084 PM1_RS03180 WP_009613141.1 731975..733348(+) (radA) [Pseudomonas sp. M1]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVDTTPTGGSGSSGRGGWAGQQANIKTLAEVSVEEMPRFSTASN
ELDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIANRMPALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESI
IATARHEQPKVMVIDSIQTIFTEQLQSAPGGVAQVRESAALLVRFAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLY
FEGESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQESVPGSVVMATWEGSRPMLVEVQALVDTSH
LANPRRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLDHQLLVFGEVGL
SGEVRPVPSGQERLKEAAKHGFKRAIVPQGNAPKEAPPGLQVIPVTRLEQALDALFE

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=669084 PM1_RS03180 WP_009613141.1 731975..733348(+) (radA) [Pseudomonas sp. M1]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCCACCTTCCCCAAATGGGCCGGCCAGTGCGCCGACTG
CGGCGCCTGGAACACCCTGGTGGAGACCGTCGTCGACACCACGCCCACCGGTGGCTCCGGCAGTTCCGGACGCGGCGGCT
GGGCCGGGCAGCAGGCCAACATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAGATGCCGCGCTTCAGCACCGCCTCCAAC
GAACTCGACCGCGTCCTCGGCGGCGGCCTGGTGGACGGCTCCGTCGTGCTCATCGGCGGCGACCCCGGCATCGGCAAGTC
GACCATCCTCCTGCAGACCCTGTGCAGCATCGCCAACCGCATGCCGGCGCTCTACGTCACCGGCGAAGAGTCGCAGCAGC
AGGTGGCCATGCGCGCGCGGCGCCTGGGCCTGCCGGAAGACAAGCTCAAGGTCATGACCGAGACCTGCATCGAGAGCATC
ATCGCCACTGCTCGCCACGAGCAGCCCAAGGTGATGGTGATCGACTCCATCCAGACCATCTTCACCGAACAGCTGCAATC
GGCCCCCGGCGGCGTCGCCCAGGTGCGCGAGAGCGCCGCGTTGCTGGTGCGCTTCGCCAAGCAGAGCGGCACGGCGATCT
TCCTGGTCGGCCACGTCACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTAT
TTCGAGGGCGAGTCCGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGCGT
GTTCGCCATGACCGACCGTGGCCTGAAGGAGGTCTCCAACCCTTCGGCGATCTTCCTCACCCGCGCCCAGGAATCGGTGC
CCGGCAGCGTGGTCATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTGCAGGCGCTGGTCGACACCAGCCAC
CTGGCCAACCCGCGGCGCGTCACCCTGGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGCTGCACCGCCACGG
CGGCATCCCCACCTACGACCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAAACCGCGTCGGACCTGG
CGCTGATGGCGGCGGTGATGTCCAGCCTGCGCAACCGGCCGCTGGATCATCAACTGCTGGTGTTCGGCGAGGTCGGCCTG
TCCGGCGAGGTGCGCCCGGTGCCCAGCGGCCAGGAACGCCTGAAGGAAGCCGCCAAGCACGGCTTCAAGCGCGCCATCGT
GCCCCAGGGCAACGCCCCCAAGGAGGCCCCGCCGGGGCTACAGGTGATCCCGGTGACGCGCCTGGAGCAGGCGCTGGATG
CGTTGTTCGAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-223)

Subunit ChlI of Mg-chelatase (ChlI)

(365-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.458

99.344

0.481
  radA Streptococcus pneumoniae Rx1

45.987

100

0.464
  radA Streptococcus pneumoniae R6

45.987

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.987

100

0.464
  radA Streptococcus pneumoniae D39

45.987

100

0.464
  radA Streptococcus mitis SK321

46.171

100

0.462
  radA Streptococcus mitis NCTC 12261

45.952

100

0.46

Multiple sequence alignment