Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG392_RS29440 Genome accession   NZ_CP109007
Coordinates   6521686..6522669 (+) Length   327 a.a.
NCBI ID   WP_329287525.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00691     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6516686..6527669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG392_RS29425 (OG392_29440) - 6517987..6519324 (-) 1338 WP_329284380.1 sugar ABC transporter substrate-binding protein -
  OG392_RS29430 (OG392_29445) - 6519454..6520461 (-) 1008 WP_329284383.1 carbohydrate ABC transporter permease -
  OG392_RS29435 (OG392_29450) - 6520466..6521392 (-) 927 WP_329284386.1 sugar ABC transporter permease -
  OG392_RS29440 (OG392_29455) cytR 6521686..6522669 (+) 984 WP_329287525.1 LacI family DNA-binding transcriptional regulator Regulator
  OG392_RS29445 (OG392_29460) - 6522870..6523535 (-) 666 WP_329284387.1 DUF4097 family beta strand repeat-containing protein -
  OG392_RS29450 (OG392_29465) - 6523778..6524569 (+) 792 WP_329284389.1 helix-turn-helix domain-containing protein -
  OG392_RS29455 (OG392_29470) - 6524639..6526393 (-) 1755 WP_329284392.1 beta-galactosidase -
  OG392_RS29460 (OG392_29475) - 6526562..6527083 (-) 522 WP_329284393.1 molybdopterin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 34766.34 Da        Isoelectric Point: 5.4467

>NTDB_id=669044 OG392_RS29440 WP_329287525.1 6521686..6522669(+) (cytR) [Streptomyces sp. NBC_00691]
MADVAQLAGVSSQTVSRVSNGDAAVVESTRAKVLDAMKELGYRPNSAARALKRGEFRAIGVITMGLSSTGNVRTLEAIAG
SASRAGYAVTLIPLDAPTQDNVRGAFTRFDELAVDAVVLIMEVHLLDTASLTLPPHVKVVVVDSDATGRFPVVDTDQRQG
ARTAVRHLLDLGHGTVWHVAGPEESFAAGRRAEAWEAALREEGRQVPPVLRGDWTPESGYEAGLRLADEPGCGAVFVAND
QMALGVLRAFHERGRRVPQDVSVVGFDDIAEAASFIPPLTTVRQDFARVGELCVDAVLRELRGETVTGVRLVPTTLTERA
STGAPGR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=669044 OG392_RS29440 WP_329287525.1 6521686..6522669(+) (cytR) [Streptomyces sp. NBC_00691]
ATGGCGGACGTCGCCCAGCTCGCGGGGGTCTCCTCGCAGACGGTCTCCCGCGTCTCTAACGGCGACGCGGCCGTCGTCGA
GAGCACCCGCGCGAAGGTCCTCGACGCCATGAAGGAGCTGGGCTACCGGCCCAACAGCGCGGCCCGTGCCCTCAAGCGCG
GCGAGTTCCGGGCCATCGGCGTCATCACCATGGGCCTCTCCAGCACGGGCAACGTCCGCACCCTGGAGGCCATCGCCGGA
TCGGCCTCCCGTGCGGGGTACGCGGTCACCCTCATCCCGCTCGACGCGCCGACCCAGGACAACGTCCGGGGCGCGTTCAC
CCGGTTCGACGAACTGGCCGTCGACGCCGTCGTGCTCATCATGGAGGTCCACCTCCTCGACACCGCCTCGCTGACCCTTC
CGCCGCACGTCAAGGTGGTCGTCGTGGACTCCGACGCCACCGGCCGCTTCCCGGTCGTGGACACGGACCAACGGCAGGGC
GCCCGCACGGCGGTGCGGCACCTGCTCGACCTCGGACACGGCACGGTCTGGCACGTCGCCGGCCCCGAGGAGTCCTTCGC
GGCCGGCCGTCGCGCGGAGGCCTGGGAGGCGGCCCTCCGTGAGGAGGGGCGGCAGGTGCCGCCCGTCCTGCGCGGGGACT
GGACGCCCGAGTCCGGCTACGAGGCGGGGCTCCGGCTCGCCGACGAGCCCGGCTGCGGCGCGGTGTTCGTGGCCAACGAC
CAGATGGCCCTCGGCGTGCTCAGGGCGTTCCACGAGCGGGGCAGACGGGTGCCGCAGGACGTGAGCGTCGTCGGCTTCGA
CGACATCGCGGAGGCCGCCTCCTTCATCCCGCCGCTGACCACGGTGCGACAGGACTTCGCGAGGGTGGGGGAGTTGTGCG
TGGACGCGGTGCTGCGGGAGCTCCGGGGCGAGACGGTCACGGGGGTGCGCCTGGTTCCCACGACCCTGACGGAGCGGGCG
AGCACGGGGGCGCCGGGGAGGTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-322)

Bacterial regulatory proteins, lacI family (LacI)

(1-45)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.364