Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LBAT_RS02045 Genome accession   NZ_AP014808
Coordinates   404807..406183 (+) Length   458 a.a.
NCBI ID   WP_060459233.1    Uniprot ID   A0A0D6A1V2
Organism   Lactobacillus acetotolerans strain NBRC 13120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 399807..411183
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBAT_RS02020 (LBAT_0409) - 400081..400677 (-) 597 WP_060459229.1 site-specific integrase -
  LBAT_RS02025 (LBAT_0410) - 400832..402193 (-) 1362 WP_060459230.1 IS4 family transposase -
  LBAT_RS02030 (LBAT_0411) pepC 402396..403744 (-) 1349 Protein_401 aminopeptidase C -
  LBAT_RS02035 (LBAT_0412) - 403825..404127 (-) 303 WP_060459231.1 hypothetical protein -
  LBAT_RS02040 (LBAT_0413) - 404249..404806 (+) 558 WP_060459232.1 dUTP diphosphatase -
  LBAT_RS02045 (LBAT_0414) radA 404807..406183 (+) 1377 WP_060459233.1 DNA repair protein RadA Machinery gene
  LBAT_RS02050 (LBAT_0415) gltX 406261..407760 (+) 1500 WP_060459234.1 glutamate--tRNA ligase -
  LBAT_RS02055 (LBAT_0416) cysS 407860..409290 (+) 1431 WP_060459235.1 cysteine--tRNA ligase -
  LBAT_RS02060 (LBAT_0417) - 409277..409720 (+) 444 WP_056969474.1 Mini-ribonuclease 3 -
  LBAT_RS02065 (LBAT_0418) rlmB 409707..410462 (+) 756 WP_060459236.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LBAT_RS02070 (LBAT_0419) - 410589..411164 (+) 576 WP_060459237.1 sigma-70 family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50219.98 Da        Isoelectric Point: 8.7549

>NTDB_id=66900 LBAT_RS02045 WP_060459233.1 404807..406183(+) (radA) [Lactobacillus acetotolerans strain NBRC 13120]
MARVKTKYKCRSCGYISASYLGRCPNCGAWNQFEKETEEVQKRSAKASPSRLIKKTGINEPVKLDKVKAEKDDRIATKSE
ELNRVLGGGIVPGSLVLIGGDPGIGKSTLMLQIMSDLSKKYKVLYVSGEESASQIKLRANRLGLGASDILLYPETDMHDI
REQINDVQPDFVVIDSIQTMNEPSLDTMTGSASQVREVTSELMKIAKMDAITIFVIGHVTKEGAIAGPKIMEHMVDTVLY
FEGDKHHSYRILHSVKNRFGAANEIGMFEMENEGLKEVTNPSSIFLDERLPRSTGSSVVVSLEGTRPLLAEIQALVTPTA
FGYAKRTTSGIDYNRAALLLAVLEKRGNLMLQNQDVYLTATGGIKLNEPAIDLAITMSVASSYTNKEISATDCFVGEVGL
TGEVRRVNKIQARVNEAAKVGFKRIFIPRHNMYKGLKDLGIEVVPVSSIPQALKLVFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=66900 LBAT_RS02045 WP_060459233.1 404807..406183(+) (radA) [Lactobacillus acetotolerans strain NBRC 13120]
ATGGCTCGTGTAAAAACCAAATATAAGTGCCGCTCTTGTGGTTATATTTCTGCAAGTTATTTGGGGCGCTGTCCTAATTG
TGGTGCCTGGAATCAATTTGAAAAGGAAACGGAAGAGGTTCAAAAGCGCTCTGCCAAGGCCAGCCCCAGTCGGTTGATTA
AGAAAACAGGTATAAATGAGCCTGTTAAGTTAGACAAAGTTAAGGCGGAAAAAGACGACCGGATAGCCACTAAATCTGAA
GAATTAAACCGTGTTTTAGGTGGTGGTATTGTACCCGGCTCACTTGTATTAATCGGTGGGGATCCTGGAATAGGTAAGTC
CACTTTGATGTTACAAATCATGAGTGATCTATCTAAAAAATACAAGGTTCTCTATGTTTCTGGAGAGGAATCAGCTAGTC
AGATTAAGCTGCGTGCCAATCGTTTAGGCCTAGGTGCTAGTGATATACTTTTATATCCAGAAACAGATATGCACGATATT
CGTGAGCAAATTAATGATGTACAACCTGATTTTGTTGTAATTGATTCTATTCAGACCATGAATGAGCCAAGTTTAGATAC
AATGACTGGCTCAGCTTCACAAGTTCGGGAAGTAACCAGCGAATTGATGAAAATTGCTAAAATGGACGCAATTACTATTT
TTGTTATTGGCCATGTTACTAAAGAGGGTGCAATTGCTGGGCCAAAAATCATGGAGCATATGGTGGATACCGTTCTTTAC
TTTGAAGGAGATAAACACCACTCCTATCGAATCTTACACTCTGTAAAAAATCGTTTTGGTGCTGCTAATGAAATTGGGAT
GTTTGAGATGGAAAATGAGGGCTTAAAGGAAGTTACTAATCCTTCGTCAATCTTTCTTGACGAACGTTTACCGCGTTCGA
CAGGTTCATCCGTTGTGGTTTCACTTGAAGGAACACGACCTCTGTTAGCTGAAATTCAGGCGCTGGTCACACCAACAGCG
TTTGGTTATGCTAAGAGGACTACATCGGGTATTGATTATAATCGAGCCGCCCTTCTTTTAGCGGTACTTGAAAAAAGAGG
CAACCTTATGCTGCAAAATCAGGATGTATATCTTACTGCGACCGGTGGTATTAAATTAAACGAACCCGCGATTGATCTAG
CTATAACGATGTCTGTGGCATCGAGTTATACTAACAAAGAAATAAGTGCTACAGATTGTTTTGTAGGCGAAGTTGGTTTG
ACTGGAGAAGTTCGGCGGGTAAATAAAATTCAAGCTCGGGTTAATGAAGCAGCTAAGGTTGGGTTTAAACGGATTTTTAT
TCCCCGTCACAATATGTATAAGGGATTAAAAGATTTGGGAATTGAAGTCGTCCCAGTTTCGAGTATCCCGCAAGCTTTAA
AGCTTGTTTTTGGTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-431)

AAA domain (AAA_25)

(67-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6A1V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

58.206

99.782

0.581
  radA Streptococcus mitis NCTC 12261

58.206

99.782

0.581
  radA Streptococcus pneumoniae Rx1

58.206

99.782

0.581
  radA Streptococcus pneumoniae D39

58.206

99.782

0.581
  radA Streptococcus pneumoniae R6

58.206

99.782

0.581
  radA Streptococcus pneumoniae TIGR4

58.206

99.782

0.581
  radA Bacillus subtilis subsp. subtilis str. 168

54.902

100

0.55

Multiple sequence alignment