Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG392_RS02110 Genome accession   NZ_CP109007
Coordinates   433934..434926 (+) Length   330 a.a.
NCBI ID   WP_329274886.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00691     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 428934..439926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG392_RS02090 (OG392_02085) - 429039..429464 (+) 426 WP_329274876.1 hypothetical protein -
  OG392_RS02095 (OG392_02090) - 429471..429986 (-) 516 WP_329274878.1 DUF305 domain-containing protein -
  OG392_RS02100 (OG392_02095) - 429995..431365 (-) 1371 WP_329274881.1 DUF1996 domain-containing protein -
  OG392_RS02105 (OG392_02100) - 431475..433601 (-) 2127 WP_329274883.1 discoidin domain-containing protein -
  OG392_RS02110 (OG392_02105) cytR 433934..434926 (+) 993 WP_329274886.1 LacI family DNA-binding transcriptional regulator Regulator
  OG392_RS02115 (OG392_02110) - 435084..436247 (+) 1164 WP_329274889.1 esterase-like activity of phytase family protein -
  OG392_RS02120 (OG392_02115) - 436320..436700 (-) 381 WP_329274891.1 hypothetical protein -
  OG392_RS02125 - 436777..439083 (-) 2307 WP_329274893.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35040.07 Da        Isoelectric Point: 7.4705

>NTDB_id=668976 OG392_RS02110 WP_329274886.1 433934..434926(+) (cytR) [Streptomyces sp. NBC_00691]
MKRPTLEVVAARAGVSKSSVSRVVNGETTVAPQIRDVVMQAVRELGYVPNAAARNLVTRRTDAVAVVVSDPPQGVVSDDP
LFSTVVRAVSRELEAAGKQVVLMLAESERSRARVEQYVAGRHVDGVMLVALHGTDPLPAALARTGLPIASFNRTSAPQVP
YASLDNIGGATLAVRHLLERGRRRIAAITGPLDLFEARERLDGYRAALHGSGRRSIVALGDFTRASGAQAMEQLLEDDPA
LDAVFASNDLMAIGALRTLRRAGRRVPEDVAVVGFDDIEAAAYTTPALTSVRSPMADQAIATVHLLLGLIEGGPGDPVVI
RNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=668976 OG392_RS02110 WP_329274886.1 433934..434926(+) (cytR) [Streptomyces sp. NBC_00691]
ATGAAACGACCCACGCTGGAAGTGGTCGCCGCTCGCGCGGGTGTGTCCAAGTCGAGCGTCTCCCGGGTGGTCAACGGCGA
GACGACCGTCGCCCCGCAGATCCGTGACGTCGTGATGCAGGCCGTACGCGAACTGGGCTACGTCCCCAACGCGGCCGCCC
GCAATCTCGTCACCCGGCGGACGGACGCGGTGGCCGTGGTCGTCTCCGATCCGCCCCAGGGCGTGGTCTCCGACGACCCC
CTGTTCTCCACCGTCGTGCGTGCCGTGAGCCGAGAGCTGGAGGCCGCGGGAAAGCAGGTCGTGCTCATGCTCGCGGAGTC
GGAGCGCAGCCGGGCCCGGGTGGAGCAGTACGTGGCCGGCCGGCACGTGGACGGCGTCATGCTCGTCGCGCTGCACGGGA
CGGACCCGCTGCCGGCGGCCCTCGCCAGGACAGGCCTGCCGATCGCCTCGTTCAACCGCACGTCCGCGCCCCAGGTGCCG
TACGCAAGCCTCGACAACATCGGCGGCGCCACACTCGCCGTCCGGCATCTGCTGGAACGGGGACGCCGCAGGATCGCCGC
CATCACCGGACCGCTGGACCTGTTCGAGGCACGCGAACGGCTCGACGGCTACCGCGCGGCGCTGCACGGCAGCGGCCGCC
GGTCGATCGTCGCGCTGGGCGACTTCACCCGGGCGTCGGGTGCCCAGGCGATGGAGCAACTCCTGGAGGACGACCCCGCG
TTGGACGCGGTGTTCGCGAGCAACGACCTCATGGCCATCGGCGCCCTGCGGACCCTGCGCCGGGCGGGGCGCCGCGTGCC
CGAGGACGTGGCCGTCGTCGGCTTCGACGACATCGAGGCCGCCGCGTACACCACGCCCGCCCTCACCTCCGTACGGAGCC
CCATGGCCGACCAGGCCATCGCCACGGTTCACCTGCTCCTGGGACTCATCGAAGGCGGCCCCGGCGATCCGGTCGTCATC
CGCAACGAACTCGTGGTCCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)

Bacterial regulatory proteins, lacI family (LacI)

(5-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35

100

0.361