Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG506_RS31835 Genome accession   NZ_CP109004
Coordinates   7251144..7252877 (-) Length   577 a.a.
NCBI ID   WP_329555010.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00696     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7246144..7257877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG506_RS31825 (OG506_31850) - 7247773..7249080 (+) 1308 WP_329555008.1 RNA polymerase sigma factor -
  OG506_RS31830 (OG506_31855) rcrQ 7249216..7251144 (-) 1929 WP_329555009.1 ABC transporter ATP-binding protein Regulator
  OG506_RS31835 (OG506_31860) rcrP 7251144..7252877 (-) 1734 WP_329555010.1 ABC transporter ATP-binding protein Regulator
  OG506_RS31840 (OG506_31865) - 7253041..7254498 (-) 1458 WP_266768397.1 FGGY family carbohydrate kinase -
  OG506_RS31845 (OG506_31870) - 7254550..7254855 (-) 306 WP_266768396.1 YtxH domain-containing protein -
  OG506_RS31865 (OG506_31890) - 7255576..7255995 (-) 420 WP_266768395.1 SHOCT domain-containing protein -
  OG506_RS31870 (OG506_31895) - 7256010..7257410 (-) 1401 WP_329555011.1 DUF2252 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62728.03 Da        Isoelectric Point: 6.1900

>NTDB_id=668937 OG506_RS31835 WP_329555010.1 7251144..7252877(-) (rcrP) [Streptomyces sp. NBC_00696]
MLIRLLRTYLRPYRKPILLLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNTGAVYFGA
RTASAVGRDIRGAIFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLTLMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLTICVTLIVRRLRPLFRSMQVRLDAVNRVLREQITGNRVIRAFVRDEYEKDRFRKANSDLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRINSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLDTESSVVP
PLAPVTQLRRHGHLEIRGVGFCYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLSLVPRLVDATDGEVLVDGVAVS
TIDPVLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVATIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668937 OG506_RS31835 WP_329555010.1 7251144..7252877(-) (rcrP) [Streptomyces sp. NBC_00696]
GTGCTCATACGACTTCTGCGGACCTATCTCAGGCCCTACAGGAAACCCATCCTTCTTCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCCACTCTGAACGCGCACATCATCGACAACGGTGTGGTGAAGGGTGACACCGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCGTGTGCAACACCGGTGCCGTCTACTTCGGCGCG
CGCACCGCGTCCGCCGTCGGCCGGGACATCCGGGGTGCCATCTTCGACCGGGTGCAGTCGTTCTCGGCCCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGGTCCAGATGCTGACCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTCGGCGGGATCATCCTGGCGCTCGGTCTGGATGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCGACGCTGACGATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGCGCCTCGACGCGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTCCGGGACG
AGTACGAGAAGGACCGGTTCCGGAAGGCCAACAGCGATCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTCGTGTGGTTCGGCGCCCACCGCATCAACAGCGG
CGGGATGCAGATCGGCGATCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGACACCGAGAGCAGTGTCGTGCCG
CCGCTCGCGCCCGTCACCCAGCTGCGCCGGCACGGGCACCTGGAGATCCGCGGGGTCGGGTTCTGCTACCCGGGCGCCGA
GGAACCCGTACTGAAGTCCATCGACCTGGTGGCCCGTCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGGA
AGTCCACTCTTCTGAGTCTGGTCCCGCGTCTGGTTGACGCGACCGACGGGGAGGTCCTCGTCGACGGGGTCGCCGTGTCG
ACCATCGACCCGGTGCTGCTCGCCAAGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCGCGGGCACCGTCGCGAC
CAACCTTCGCTACGGCAATCCCGACGCCACCGACGAGGAGTTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAGGGGCTGGAGAACGGCCTCGACTCCCCCATCGCACAGGGCGGCACCAACGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTCTCGCAGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCGCAGCGGGTGGCCACCATCA
GGGACGCCGACCGCATCGTCGTACTCGACGAGGGCCGGGTCGTGGGGACGGGCCGCCATCACGAACTGATGGCGGACAAC
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.071

100

0.393