Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG506_RS31830 Genome accession   NZ_CP109004
Coordinates   7249216..7251144 (-) Length   642 a.a.
NCBI ID   WP_329555009.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00696     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7244216..7256144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG506_RS31815 (OG506_31840) - 7244474..7245751 (+) 1278 WP_266768402.1 FAD-dependent oxidoreductase -
  OG506_RS31820 (OG506_31845) dnaG 7245787..7247691 (+) 1905 WP_328934060.1 DNA primase -
  OG506_RS31825 (OG506_31850) - 7247773..7249080 (+) 1308 WP_329555008.1 RNA polymerase sigma factor -
  OG506_RS31830 (OG506_31855) rcrQ 7249216..7251144 (-) 1929 WP_329555009.1 ABC transporter ATP-binding protein Regulator
  OG506_RS31835 (OG506_31860) rcrP 7251144..7252877 (-) 1734 WP_329555010.1 ABC transporter ATP-binding protein Regulator
  OG506_RS31840 (OG506_31865) - 7253041..7254498 (-) 1458 WP_266768397.1 FGGY family carbohydrate kinase -
  OG506_RS31845 (OG506_31870) - 7254550..7254855 (-) 306 WP_266768396.1 YtxH domain-containing protein -
  OG506_RS31865 (OG506_31890) - 7255576..7255995 (-) 420 WP_266768395.1 SHOCT domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69562.25 Da        Isoelectric Point: 6.5152

>NTDB_id=668936 OG506_RS31830 WP_329555009.1 7249216..7251144(-) (rcrQ) [Streptomyces sp. NBC_00696]
MAGPMGRMMAGTGPDARSMDFKVSGKRLIGQFRPERLTIGLLLMCVVVSVGLNVVGPKILGNATDLVFAGIIGRQMPAGT
TKAQALQAMRDRGQGSVADMLKSTDFTPGKGIDFTSVGHVLLLALCTFLVAGLLMAVATRMVNRAVNRTMFRLRESVQTK
MSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLAMMFWVSWLLALVALVTVPLSFLVATRIGK
RSQPHFVQQWRSTGKLNAHVEEMYTGHTLVKVFGRQDESAELFAEQNNALYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGSLSIGDVQAFVQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQAPDPMPSERPAELRGLVALE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIARMSRDELRSGIGMVLQDT
WLFGGSIADNIAYGASREVTRGEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=668936 OG506_RS31830 WP_329555009.1 7249216..7251144(-) (rcrQ) [Streptomyces sp. NBC_00696]
ATGGCCGGGCCCATGGGGCGGATGATGGCCGGGACGGGCCCCGACGCCCGTTCGATGGACTTCAAGGTGTCCGGCAAGCG
GCTGATCGGCCAGTTCAGGCCGGAGCGGCTGACCATCGGCCTCCTGCTGATGTGCGTCGTGGTGAGCGTCGGGCTGAACG
TGGTCGGGCCGAAAATCCTCGGCAACGCCACCGACCTGGTGTTCGCGGGCATCATCGGGCGGCAGATGCCGGCCGGCACG
ACCAAGGCGCAGGCCCTCCAGGCGATGCGCGACCGCGGCCAGGGTTCGGTCGCGGACATGCTCAAGAGCACGGACTTCAC
GCCGGGCAAGGGCATCGACTTCACCTCGGTGGGTCATGTGCTGCTGCTCGCGCTGTGCACGTTCCTGGTGGCCGGACTGC
TGATGGCGGTGGCGACCCGGATGGTCAACCGGGCGGTCAACCGGACCATGTTCCGGCTGCGCGAGAGCGTGCAGACGAAG
ATGTCGCGGCTCCCGCTGTCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGCGCGACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGTTGCTCACGATCATCGGCGTCCTCGCGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCCTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCTCGACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGCCGGCAGGACGAGTCGGCGGAACTGTTCGCCGAGCAGAACAACGCGCTGTACGAGGCGG
GCTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTCTCGAACCTCAACTACGTGCTGGTGGCC
GTGGTCGGCGGCCTGCGCGTCGCTTCCGGCTCACTCTCCATCGGCGATGTGCAGGCGTTCGTCCAGTACTCGCGCCAGTT
CTCCATGCCGCTGACCCAGGTCGCGTCGATGGCGAACCTGGTCCAGTCCGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TCCTCGACGCCGAGGAGCAGGCCCCCGACCCGATGCCGAGCGAACGCCCAGCGGAACTGCGCGGCCTGGTCGCCCTGGAG
CACGTCTCCTTCCGCTACGACCCCGACAAGCCGCTCATCGAGGACCTCTCCCTGACGGTGGAACCGGGCCACACGGTCGC
GATCGTCGGCCCGACGGGTGCCGGCAAGACGACCCTGGTGAACCTCCTCATGCGGTTCTACGAGGTCTCCGGCGGGCGCA
TCACCCTCGACGGCGTGGACATCGCGCGGATGTCCCGGGACGAACTCCGGTCCGGGATCGGAATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCTCCATCGCGGACAACATCGCGTACGGGGCCTCGCGCGAGGTCACCCGGGGCGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGAGGGCTACGACACGGTCATCGACGACGAGGGCACGG
GGGTCAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTCCTCGACGAG
GCGACGTCCTCCGTGGACACCCGCACGGAGGTGTTGATCCAGAAGGCGATGGCCAAGCTCGCGCACGGCCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACGCGGACCTGTTGGCGGCGGACGGGGCGTATGCGCGGCTGTACAAGGCGCAGTTCGCCCAGGCGGTTGCGGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.968

96.262

0.385