Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG506_RS20345 Genome accession   NZ_CP109004
Coordinates   4755652..4756650 (-) Length   332 a.a.
NCBI ID   WP_266771374.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00696     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4750652..4761650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG506_RS20330 (OG506_20340) - 4751909..4753462 (-) 1554 WP_329553467.1 MFS transporter -
  OG506_RS20335 (OG506_20345) - 4753613..4754584 (+) 972 WP_329553468.1 YafY family protein -
  OG506_RS20340 (OG506_20350) - 4754592..4755221 (-) 630 WP_329557590.1 helix-turn-helix domain-containing protein -
  OG506_RS20345 (OG506_20355) rpoS 4755652..4756650 (-) 999 WP_266771374.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG506_RS20350 (OG506_20360) - 4756821..4757351 (+) 531 WP_329553469.1 N-acetyltransferase family protein -
  OG506_RS20355 (OG506_20365) - 4757392..4758195 (-) 804 WP_329553470.1 class III extradiol ring-cleavage dioxygenase -
  OG506_RS20360 (OG506_20370) - 4758306..4758818 (+) 513 WP_266771371.1 MarR family transcriptional regulator -
  OG506_RS20365 (OG506_20375) - 4758930..4760492 (-) 1563 WP_328829875.1 MFS transporter -
  OG506_RS20370 (OG506_20380) - 4760644..4761288 (-) 645 WP_266771369.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37176.93 Da        Isoelectric Point: 5.3996

>NTDB_id=668909 OG506_RS20345 WP_266771374.1 4755652..4756650(-) (rpoS) [Streptomyces sp. NBC_00696]
MATRAVARRKSATGETSGVARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVFARQVLEGEEKSQAD
ASRAELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQF
GDLLEDTSAVSPEQSVMTLLRSEELDDLIGRLDQRTASIIKMRYGIEDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLASQTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=668909 OG506_RS20345 WP_266771374.1 4755652..4756650(-) (rpoS) [Streptomyces sp. NBC_00696]
ATGGCAACCCGTGCCGTCGCCCGTCGTAAGTCCGCCACCGGCGAGACCTCCGGCGTGGCGCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTATCTCGACGAAATCGCGCGCACACCGCTGCTCGACGCCGCAAAGG
AAGTCGAGCTCTCACAGACCATCGAAGCGGGCGTGTTCGCGCGCCAGGTTCTCGAGGGCGAGGAGAAGTCCCAGGCGGAC
GCCTCCCGCGCCGAGCTCGAGGCCCTGGTCGCCGAAGGGGAGCGTGCCAAGGACGTCTTCATCCGTTCCAACCTCCGCCT
GGTCGTGGCCGTGGCCCGCCGTTACCCCCGTAGCGGCCTGCCCCTCCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGCCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCCCGGACCATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTGGGCCGGATCCGCCGAGT
GCAGCGCGAGTTCAACCGGAAGAACGGCCGGGAGCCCGAGCACGCGGAGATCGCCGCGGAGCTGGACTCGACGCCGGAGC
GCGTGACCGACGTGCTGGACTGGGCCCGTGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGCGACACCCAGTTC
GGTGACCTCCTGGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCATGACCCTGTTGCGCAGCGAGGAGCTGGACGA
CCTGATCGGCCGGCTCGACCAGCGCACGGCGTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGTGAGCGGACGC
TGACGGAGGTCGGCAAGGAGCACGGGCTGACCCGGGAGCGGATCCGGCAGATCGAGAAGCACGCGTTGCTGGAGCTGAAG
AAGCTGGCGAGCCAGACCGGGTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.468

90.06

0.364