Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7K50_RS17330 Genome accession   NZ_AP022221
Coordinates   3653806..3654411 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain WP8-S17-ESBL-08     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3648806..3659411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7K50_RS17310 (WP8S17E08_33580) aes 3648947..3649906 (+) 960 WP_000764314.1 acetyl esterase -
  H7K50_RS17315 (WP8S17E08_33590) hemH 3649903..3650865 (-) 963 WP_001250117.1 ferrochelatase -
  H7K50_RS17320 (WP8S17E08_33600) adk 3650997..3651641 (-) 645 WP_001220233.1 adenylate kinase -
  H7K50_RS17325 (WP8S17E08_33610) htpG 3651822..3653696 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  H7K50_RS17330 (WP8S17E08_33620) recR 3653806..3654411 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  H7K50_RS17335 (WP8S17E08_33630) ybaB 3654411..3654740 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  H7K50_RS17340 (WP8S17E08_33640) dnaX 3654793..3656724 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  H7K50_RS17345 (WP8S17E08_33650) apt 3656853..3657404 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  H7K50_RS17350 (WP8S17E08_33660) ybaN 3657557..3657934 (-) 378 WP_001188905.1 DUF454 family protein -
  H7K50_RS17355 (WP8S17E08_33670) priC 3658004..3658531 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  H7K50_RS17360 (WP8S17E08_33680) rsmS 3658545..3658709 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=66888 H7K50_RS17330 WP_001195025.1 3653806..3654411(-) (recR) [Escherichia coli strain WP8-S17-ESBL-08]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=66888 H7K50_RS17330 WP_001195025.1 3653806..3654411(-) (recR) [Escherichia coli strain WP8-S17-ESBL-08]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment