Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG506_RS01455 Genome accession   NZ_CP109004
Coordinates   332166..332837 (-) Length   223 a.a.
NCBI ID   WP_329550617.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00696     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 327166..337837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG506_RS01425 (OG506_01440) - 327942..328118 (-) 177 WP_329550614.1 hypothetical protein -
  OG506_RS01430 (OG506_01445) - 328316..328897 (+) 582 Protein_285 IS5 family transposase -
  OG506_RS01435 (OG506_01450) - 328915..329628 (-) 714 WP_329550615.1 hypothetical protein -
  OG506_RS01440 (OG506_01455) - 329780..331009 (-) 1230 WP_329550607.1 IS701 family transposase -
  OG506_RS01445 (OG506_01460) - 331163..331498 (-) 336 Protein_288 transposase -
  OG506_RS01450 (OG506_01465) - 331640..332062 (+) 423 WP_329550616.1 hypothetical protein -
  OG506_RS01455 (OG506_01470) dinR/lexA 332166..332837 (-) 672 WP_329550617.1 transcriptional repressor LexA Regulator
  OG506_RS01460 (OG506_01475) - 333138..333527 (-) 390 WP_329550618.1 hypothetical protein -
  OG506_RS01465 (OG506_01480) - 333723..334346 (-) 624 WP_329550619.1 ATP/GTP-binding protein -
  OG506_RS01470 (OG506_01485) - 334327..334725 (-) 399 WP_329550620.1 DUF742 domain-containing protein -
  OG506_RS01475 (OG506_01490) - 334722..335153 (-) 432 WP_329550621.1 roadblock/LC7 domain-containing protein -
  OG506_RS01480 (OG506_01495) - 335150..337627 (-) 2478 WP_329550622.1 nitrate- and nitrite sensing domain-containing protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24039.33 Da        Isoelectric Point: 6.2583

>NTDB_id=668874 OG506_RS01455 WP_329550617.1 332166..332837(-) (dinR/lexA) [Streptomyces sp. NBC_00696]
MDSSKPARRGRPPGPRTAEGELTDRQSAIVRYIREAVDRQGYPPSMREIGQAVHLASTSSVAHQVMALESKGVLYRDPNR
PRAYRVRPTWAPELDGRSAAQVDVPLVGRIAAGAPLLAEETVGDIYAMPRQVVGDGDLFALTVTGDSMIGAAICDGDIVT
VRRQDSADHGDIVAALLDDEATVKTLRRQDGQVWLMPRNPAYEPIPGDGAQILGKVVGVLRLL

Nucleotide


Download         Length: 672 bp        

>NTDB_id=668874 OG506_RS01455 WP_329550617.1 332166..332837(-) (dinR/lexA) [Streptomyces sp. NBC_00696]
ATGGACAGCAGCAAGCCGGCCCGTAGAGGCCGCCCACCGGGCCCCCGGACCGCTGAGGGCGAGCTGACAGACCGGCAGTC
GGCCATCGTCCGCTACATCAGGGAAGCGGTCGACCGGCAGGGCTACCCGCCGTCGATGCGCGAGATCGGCCAAGCCGTCC
ACCTCGCCAGCACCTCATCGGTCGCACACCAGGTGATGGCCCTCGAGAGCAAGGGTGTCCTCTACCGTGACCCCAACCGT
CCCCGCGCCTACCGGGTCCGGCCCACGTGGGCACCCGAGCTGGACGGCAGAAGCGCGGCACAGGTCGACGTGCCGCTCGT
CGGACGCATCGCCGCCGGCGCACCCCTGCTCGCCGAGGAGACGGTCGGAGACATCTACGCCATGCCCCGTCAAGTCGTGG
GCGACGGCGACCTGTTCGCCCTGACCGTCACCGGCGACAGCATGATCGGCGCCGCGATCTGTGACGGCGACATCGTGACC
GTACGACGCCAGGACAGCGCCGACCACGGAGACATCGTCGCCGCACTCCTGGACGACGAGGCCACCGTCAAGACGTTGCG
CCGGCAGGACGGGCAGGTGTGGCTCATGCCCCGCAACCCTGCATACGAGCCGATCCCCGGTGACGGGGCGCAGATCCTGG
GCAAGGTCGTCGGAGTCCTGCGGCTTCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.335

91.031

0.404