Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OID55_RS35830 Genome accession   NZ_CP108990
Coordinates   8203838..8204830 (-) Length   330 a.a.
NCBI ID   WP_267049374.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00715     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8198838..8209830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OID55_RS35810 (OID55_35760) - 8199946..8200284 (-) 339 WP_406362622.1 cyclic-phosphate processing receiver domain-containing protein -
  OID55_RS35815 (OID55_35765) - 8201194..8201607 (-) 414 WP_404124317.1 SHOCT domain-containing protein -
  OID55_RS35820 (OID55_35770) - 8201767..8203140 (-) 1374 WP_351496115.1 DUF2252 domain-containing protein -
  OID55_RS35825 (OID55_35775) - 8203448..8203804 (+) 357 WP_352202057.1 amphi-Trp domain-containing protein -
  OID55_RS35830 (OID55_35780) cytR 8203838..8204830 (-) 993 WP_267049374.1 LacI family DNA-binding transcriptional regulator Regulator
  OID55_RS35835 (OID55_35785) - 8205159..8206880 (+) 1722 WP_406362626.1 discoidin domain-containing protein -
  OID55_RS35840 (OID55_35790) - 8207024..8208394 (+) 1371 WP_327408129.1 DUF1996 domain-containing protein -
  OID55_RS35845 (OID55_35795) - 8208406..8208981 (+) 576 WP_406362628.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35211.14 Da        Isoelectric Point: 6.9290

>NTDB_id=668798 OID55_RS35830 WP_267049374.1 8203838..8204830(-) (cytR) [Streptomyces sp. NBC_00715]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVHELGYVPNGAARNLVTRRTDTLALVVSDPPQGVVSDDP
LFSAVVRAVSRELEVAGKRLVLMLAESDQSRTRVEQYVAGGHVDGVLLVALHGTDPLPSALARQGLPVVSFNRTSAHDVP
YVALDNAGGAALAVRHLLDRGRRRISTITGPLELHEARERLDGYRRTLRDTGRRSIVALGDFTRVSGAEAMRQLLDDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVVGFDDIEAASYTTPALTSVRSPMADQATAAVHLLLGLIGGGPSNPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=668798 OID55_RS35830 WP_267049374.1 8203838..8204830(-) (cytR) [Streptomyces sp. NBC_00715]
ATGAAGCGCCCCACTCTCGAAGTGGTCGCCGCCCGGGCCGGCGTGTCCAAATCGAGCGTTTCCCGCGTCATCAACGGCGA
GACGACCGTTGCCCCACAGATCCGAGACGTCGTGATGCGCGCTGTCCACGAACTCGGGTACGTGCCCAACGGAGCAGCAC
GCAACCTCGTCACGCGTCGCACCGACACCCTCGCCCTGGTGGTCTCCGACCCGCCGCAAGGCGTCGTGTCCGACGACCCC
CTCTTCTCGGCCGTCGTGCGCGCGGTCAGCCGAGAACTGGAAGTCGCCGGCAAGCGGCTCGTGCTCATGCTCGCGGAGTC
GGACCAGAGTCGTACCAGAGTGGAGCAGTACGTCGCCGGCGGGCACGTGGACGGCGTCCTCCTCGTCGCCCTGCACGGTA
CGGATCCGCTGCCCTCAGCACTGGCCCGGCAGGGCCTGCCCGTCGTCTCCTTCAACCGCACCTCAGCACACGACGTCCCC
TACGTGGCCCTGGACAATGCCGGTGGGGCAGCGCTGGCGGTCCGTCACCTTCTCGACCGTGGCCGCCGCCGTATCTCGAC
CATCACCGGACCGCTCGAACTGCACGAGGCGCGGGAACGCCTCGACGGCTACCGCCGTACGCTCCGCGACACCGGCCGTC
GCTCCATCGTGGCCCTGGGCGACTTCACCAGGGTCTCCGGCGCCGAAGCCATGCGTCAGCTCCTGGATGACGATCCCGAC
CTCGACGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGAGCCCTTCGCACCCTCCACCAAGCCGGACGCCGCGTCCC
CGAGGACGTCGCCGTCGTCGGCTTCGACGACATCGAAGCCGCGTCCTACACGACCCCCGCCCTCACCTCGGTCCGCAGCC
CCATGGCCGACCAGGCAACCGCCGCCGTCCACCTGCTCCTCGGCCTCATCGGCGGCGGCCCCTCGAACCCGGTGATCATG
CCGAACGAGCTGGTGGTGCGTGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361