Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OID55_RS35745 Genome accession   NZ_CP108990
Coordinates   8186312..8187328 (+) Length   338 a.a.
NCBI ID   WP_351499205.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00715     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8181312..8192328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OID55_RS35730 (OID55_35680) - 8182647..8183588 (-) 942 WP_406362607.1 carbohydrate ABC transporter permease -
  OID55_RS35735 (OID55_35685) - 8183602..8184597 (-) 996 WP_385393278.1 carbohydrate ABC transporter permease -
  OID55_RS35740 (OID55_35690) - 8184713..8186026 (-) 1314 WP_164372322.1 ABC transporter substrate-binding protein -
  OID55_RS35745 (OID55_35695) cytR 8186312..8187328 (+) 1017 WP_351499205.1 LacI family DNA-binding transcriptional regulator Regulator
  OID55_RS35750 (OID55_35700) - 8187681..8188451 (+) 771 WP_406362610.1 TDT family transporter -
  OID55_RS35755 (OID55_35705) - 8188485..8188667 (+) 183 WP_406362612.1 hypothetical protein -
  OID55_RS35760 (OID55_35710) - 8189367..8190476 (+) 1110 WP_266618201.1 sugar ABC transporter substrate-binding protein -
  OID55_RS35765 (OID55_35715) - 8190589..8191365 (+) 777 WP_266850582.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36083.81 Da        Isoelectric Point: 5.4688

>NTDB_id=668797 OID55_RS35745 WP_351499205.1 8186312..8187328(+) (cytR) [Streptomyces sp. NBC_00715]
MGGRQRPTIKTVAARAGVGRTTVSRVINGSELVSEKARAAVLAAIAELNYVPNSVARGLVTSRTNSVALVIPESESRLGS
EPYFSAVIRGVSTALAETRTQLQLVLVRDQAERDQLTESVAERRVDGVLLVSVHEHDPLPGLLEDMGLPTVLAGRRSPEE
SLSHVHSDNAGGAAAAVEHLLGRGRRTIGTISGPLDMDVARSRLQGWRETLEKAGREVPEGLVASSDFTEEGGGAAMRSL
LEQVPALDAVFVASDVMAAGALAELRRQGRRVPDDVAVVGFDDSIIARHTHPPLTSVRQPVEEIGSTIARILLAEIDDPE
EPRRHIVLSTELVVRESS

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=668797 OID55_RS35745 WP_351499205.1 8186312..8187328(+) (cytR) [Streptomyces sp. NBC_00715]
ATGGGGGGCAGGCAACGCCCGACCATCAAGACCGTGGCCGCCCGCGCCGGCGTCGGACGCACCACGGTTTCACGAGTCAT
CAACGGCTCCGAACTCGTCAGCGAGAAGGCGAGGGCCGCCGTGCTCGCCGCCATCGCCGAACTGAACTACGTCCCGAACT
CGGTCGCCCGGGGACTGGTGACGAGCCGGACCAACTCCGTTGCCCTGGTCATTCCCGAGTCGGAGAGCCGACTGGGCTCC
GAGCCCTACTTCTCGGCAGTCATCCGCGGGGTCAGCACCGCGCTGGCGGAGACCCGGACGCAACTGCAACTCGTCCTCGT
ACGCGATCAGGCCGAACGGGACCAGCTCACCGAGTCGGTGGCCGAGCGACGGGTGGACGGTGTACTCCTCGTCTCGGTGC
ACGAACACGATCCGCTGCCGGGGCTGCTGGAGGACATGGGCCTGCCCACGGTGCTCGCCGGGCGCCGTTCGCCCGAGGAG
TCGCTCAGCCACGTGCACTCCGACAACGCGGGCGGAGCCGCGGCCGCCGTCGAGCACCTGCTCGGCCGGGGACGCCGGAC
GATCGGCACGATCAGCGGGCCCCTGGACATGGACGTGGCCCGTAGCCGGCTCCAGGGGTGGCGCGAAACCCTCGAGAAGG
CGGGCCGCGAGGTCCCCGAAGGGCTCGTGGCCTCCTCCGACTTCACCGAGGAGGGCGGCGGGGCCGCCATGCGCTCACTC
CTCGAACAAGTCCCCGCGCTCGACGCCGTGTTCGTCGCCTCGGACGTCATGGCTGCGGGTGCGCTCGCGGAGCTGCGCCG
ACAGGGGCGGCGCGTTCCCGACGACGTCGCGGTGGTCGGGTTCGACGACTCCATCATCGCCAGGCACACCCACCCGCCCC
TCACCAGCGTGCGTCAGCCGGTCGAAGAGATCGGCAGCACGATCGCCCGCATTCTGCTGGCGGAGATCGATGACCCCGAG
GAGCCTCGCCGGCACATCGTCCTTTCCACGGAGCTGGTGGTGCGGGAGTCGTCCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(8-53)

Periplasmic binding protein-like domain (Peripla_BP_3)

(177-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.39

100

0.376