Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OID55_RS01105 Genome accession   NZ_CP108990
Coordinates   312775..313449 (-) Length   224 a.a.
NCBI ID   WP_406359540.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00715     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 307775..318449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OID55_RS01060 (OID55_01050) - 307844..308161 (+) 318 WP_406359526.1 Imm51 family immunity protein -
  OID55_RS01065 - 308198..308305 (-) 108 Protein_212 IS630 family transposase -
  OID55_RS01070 (OID55_01060) - 308354..308755 (+) 402 WP_406359527.1 hypothetical protein -
  OID55_RS01075 (OID55_01065) - 309368..309778 (+) 411 WP_406359529.1 hypothetical protein -
  OID55_RS01080 (OID55_01070) - 309916..310206 (+) 291 WP_406359531.1 CPCC family cysteine-rich protein -
  OID55_RS01085 (OID55_01075) - 310295..310552 (-) 258 WP_406359533.1 hypothetical protein -
  OID55_RS01090 (OID55_01080) - 310542..310772 (-) 231 WP_406359534.1 hypothetical protein -
  OID55_RS01095 (OID55_01085) - 311044..311637 (+) 594 WP_406359536.1 SMI1/KNR4 family protein -
  OID55_RS01100 (OID55_01090) - 311789..312739 (+) 951 WP_406359538.1 Ku protein -
  OID55_RS01105 (OID55_01095) dinR/lexA 312775..313449 (-) 675 WP_406359540.1 transcriptional repressor LexA Regulator
  OID55_RS01110 (OID55_01100) - 313557..314030 (-) 474 WP_406359542.1 NUDIX hydrolase -
  OID55_RS01115 (OID55_01105) - 314249..314497 (+) 249 WP_406359544.1 hypothetical protein -
  OID55_RS01120 (OID55_01110) - 314536..315522 (+) 987 WP_406359546.1 phosphotransferase family protein -
  OID55_RS01125 (OID55_01115) - 315483..316328 (-) 846 WP_406359547.1 class I SAM-dependent methyltransferase -
  OID55_RS01130 (OID55_01120) - 316325..317572 (-) 1248 WP_406359549.1 ATP-grasp domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24043.46 Da        Isoelectric Point: 5.6537

>NTDB_id=668727 OID55_RS01105 WP_406359540.1 312775..313449(-) (dinR/lexA) [Streptomyces sp. NBC_00715]
MENSTPGRAGRPPGIRTVEGQLTARQAAVVRYITDSVARQGYPPSMREIGAAVGLSSTSSVAHQLMALEHKGVLYRDPHR
PRAYRVRPSWAPELADGRAAEPVEVPLVGRIAAGAPLLAEEMVEDVYSMPRQVVGDGDLFALTVSGDSMIDAAICDGDIL
TVRRQDSADHGDIVAGLLGEEATVKVLHRQDGKVWLMPRNPAYEPIPADDVQILGKVVGVLRVL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=668727 OID55_RS01105 WP_406359540.1 312775..313449(-) (dinR/lexA) [Streptomyces sp. NBC_00715]
ATGGAAAACAGCACGCCAGGACGCGCGGGCAGGCCCCCCGGCATACGCACCGTCGAGGGCCAACTGACAGCTCGACAGGC
GGCCGTCGTCCGCTACATCACCGACTCCGTCGCCCGCCAGGGTTACCCGCCCTCGATGCGCGAGATCGGCGCAGCGGTCG
GACTTTCTTCGACCAGTTCAGTTGCACATCAGCTCATGGCGCTGGAACACAAGGGCGTCCTCTACCGCGACCCGCACCGG
CCCCGCGCCTACCGCGTACGCCCCTCCTGGGCCCCCGAACTCGCCGACGGCCGCGCGGCCGAGCCTGTCGAGGTGCCGCT
CGTCGGACGGATCGCGGCCGGCGCCCCGCTCCTCGCCGAGGAGATGGTCGAGGACGTGTACTCCATGCCCCGCCAGGTCG
TCGGTGACGGCGACCTCTTTGCCTTGACGGTGTCCGGGGACAGCATGATCGACGCGGCGATCTGCGATGGCGACATTTTG
ACCGTCCGCCGCCAGGACAGCGCCGACCACGGCGACATCGTGGCCGGCCTCCTGGGGGAGGAGGCCACGGTCAAAGTCTT
GCACCGGCAAGACGGCAAAGTTTGGCTGATGCCCCGCAACCCCGCCTACGAACCGATCCCCGCCGACGACGTCCAGATCC
TCGGCAAGGTCGTCGGCGTCCTGCGCGTCCTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(106-218)

LexA DNA binding domain (LexA_DNA_bind)

(21-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.204

91.964

0.397