Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG713_RS28435 Genome accession   NZ_CP108987
Coordinates   6434657..6436390 (-) Length   577 a.a.
NCBI ID   WP_054244943.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00723     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6429657..6441390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG713_RS28425 (OG713_28425) - 6431305..6432635 (+) 1331 Protein_5609 RNA polymerase sigma factor -
  OG713_RS28430 (OG713_28430) rcrQ 6432729..6434657 (-) 1929 WP_054244791.1 ABC transporter ATP-binding protein Regulator
  OG713_RS28435 (OG713_28435) rcrP 6434657..6436390 (-) 1734 WP_054244943.1 ABC transporter ATP-binding protein Regulator
  OG713_RS28440 (OG713_28440) - 6436666..6438123 (-) 1458 WP_028806369.1 FGGY-family carbohydrate kinase -
  OG713_RS28445 (OG713_28445) - 6438292..6438597 (-) 306 WP_028806368.1 hypothetical protein -
  OG713_RS28465 (OG713_28465) - 6440091..6440324 (+) 234 WP_053672219.1 type II toxin-antitoxin system VapB family antitoxin -
  OG713_RS28470 (OG713_28470) - 6440321..6440728 (+) 408 WP_365393829.1 PIN domain nuclease -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62301.46 Da        Isoelectric Point: 5.7775

>NTDB_id=668703 OG713_RS28435 WP_054244943.1 6434657..6436390(-) (rcrP) [Streptomyces sp. NBC_00723]
MLIRLLRTYLRPYKKPIALLVGLQFLQTCATLYLPTLNAHIIDNGVVEGDTGYILSFGGVMIGISLAQVVCNIGAVYYGA
RTASALGRDLRGAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGVVLALGLDVPLSAV
LVAVVPVLGICVTLIVRRLRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEFEQQRFRKANADLTDVSLKSGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PVAPVTELRRHGHLEIRGAGFRYPGAEEPVLKSVELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVDGVAVA
EVDPVLLAKTVGLVPQRPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVEGLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAEATVVIVAQRVATIRDADRIIVLDEGLVVGTGTHRELMAAN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668703 OG713_RS28435 WP_054244943.1 6434657..6436390(-) (rcrP) [Streptomyces sp. NBC_00723]
GTGCTCATACGACTACTACGGACCTATCTCAGGCCCTACAAGAAACCCATCGCCCTGCTCGTAGGGCTCCAGTTCCTCCA
GACCTGCGCCACCCTCTACCTGCCCACACTGAACGCGCACATCATCGACAACGGCGTCGTCGAGGGAGACACCGGATACA
TCCTGTCCTTCGGCGGCGTGATGATCGGCATCTCGCTGGCGCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
AGAACCGCTTCCGCGCTCGGCCGGGACCTGCGGGGGGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCCTCGCTGATCACCCGGACGACCAACGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCCATCATGTGCGTGGGCGGGGTGGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGGTGCTGGGCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGGTCGATGCA
GGTGAAGCTGGACACCGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGGGACG
AGTTCGAACAGCAGCGGTTCCGCAAGGCCAACGCCGACCTCACCGACGTCTCGCTGAAGAGCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCCGTGGTGTGGTTCGGTGCCCATCGGATCGACAGCGG
TGGGATGCAGATCGGCGATCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGGATCCAGGAGGTGCTGGACACCTCGTCGTCCGTGGTGCCG
CCGGTGGCTCCCGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGGGGGGCCGGATTCCGCTATCCCGGCGCCGA
GGAGCCCGTCCTGAAGTCCGTCGAGCTCGTGGCGCGGCCGGGCGAGACGACGGCCGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACACTGCTCGGGCTGGTGCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTGCTCGTGGACGGCGTGGCCGTCGCC
GAGGTCGACCCGGTGCTGCTGGCGAAGACCGTCGGACTCGTGCCGCAGAGGCCGTACCTGTTCGCGGGCACGGTGGCGAC
CAATCTGCGCTACGGCAATCCGGACGCGACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGGGTCTGGAGAACGGGCTCGACTCCCCCATCGCGCAGGGCGGGACGAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCCCGGACGCTCGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCACTCGACTACGCCACCGA
CGCGGCACTGCGGGCGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GCGACGCCGACCGGATCATCGTCCTCGACGAGGGTCTGGTCGTCGGCACGGGTACCCACCGCGAGCTGATGGCGGCGAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(20-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.426

97.747

0.395