Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG713_RS28430 Genome accession   NZ_CP108987
Coordinates   6432729..6434657 (-) Length   642 a.a.
NCBI ID   WP_054244791.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00723     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6427729..6439657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG713_RS28415 (OG713_28415) - 6427889..6429154 (+) 1266 WP_393823327.1 NAD(P)/FAD-dependent oxidoreductase -
  OG713_RS28420 (OG713_28420) dnaG 6429307..6431202 (+) 1896 WP_054244793.1 DNA primase -
  OG713_RS28425 (OG713_28425) - 6431305..6432635 (+) 1331 Protein_5609 RNA polymerase sigma factor -
  OG713_RS28430 (OG713_28430) rcrQ 6432729..6434657 (-) 1929 WP_054244791.1 ABC transporter ATP-binding protein Regulator
  OG713_RS28435 (OG713_28435) rcrP 6434657..6436390 (-) 1734 WP_054244943.1 ABC transporter ATP-binding protein Regulator
  OG713_RS28440 (OG713_28440) - 6436666..6438123 (-) 1458 WP_028806369.1 FGGY-family carbohydrate kinase -
  OG713_RS28445 (OG713_28445) - 6438292..6438597 (-) 306 WP_028806368.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69462.78 Da        Isoelectric Point: 5.4240

>NTDB_id=668702 OG713_RS28430 WP_054244791.1 6432729..6434657(-) (rcrQ) [Streptomyces sp. NBC_00723]
MAGPMGRMMAGTGPDSHSLDFKVSGRRLLGQFKPERFTLYAMLACVTLSVGLSVVGPKILGKATDLVFAGIVGRQMPAGA
SKEQVLDSMRERGEGGVADMLRSTDFTPGKGIDFGSIGEVLLLALGVFLVAGLLMAVATRLVNRSVNRTMFRMREDVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTVIGVLAMMFWVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRTTGKLNAHIEEMYTGHTLVKVFGRQEESAQQFAEQNDALYEAGFKAQFNSGVMQPLMMFVSNINYVLVA
VVGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQLASMANLVQSGVASAERVFELLDAEEQEADPVAAERPAELRGRVALE
GVSFRYDPEKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDIARMSRDELRAGIGMVLQDT
WLFGGTIAENIAYGASGEVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPTILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHTDLLAADGAYARLYKAQFAQALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=668702 OG713_RS28430 WP_054244791.1 6432729..6434657(-) (rcrQ) [Streptomyces sp. NBC_00723]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGCACCGGTCCCGACAGCCACTCGCTGGACTTCAAGGTGTCCGGCAGGCG
GCTGCTCGGTCAGTTCAAGCCGGAGCGGTTCACCCTCTACGCGATGCTGGCCTGCGTGACGCTGAGCGTCGGCCTCAGCG
TGGTCGGGCCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGACGGCAGATGCCGGCCGGGGCG
AGCAAGGAGCAGGTCCTCGACTCGATGCGGGAACGCGGCGAGGGCGGCGTCGCCGACATGCTCAGGAGTACCGACTTCAC
CCCCGGCAAGGGCATCGACTTCGGCTCGATCGGCGAGGTCCTGCTGCTCGCGCTCGGGGTGTTCCTGGTCGCCGGTCTGC
TGATGGCGGTGGCGACGCGGCTGGTCAACAGGTCCGTCAACCGCACCATGTTCCGGATGCGCGAGGACGTGCAGACGAAG
CTGTCCCGGCTGCCGCTGTCGTACTTCGACAAGCGTCAGCGCGGCGAGGTGCTGTCCCGCGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGCTGCTGACCGTCATCGGCGTGCTGGCGATGATGT
TCTGGGTGTCGTGGATCCTCGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCGTTCGTCGTCGCCACCCGCGTGGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGTCA
CACGCTGGTGAAGGTGTTCGGCCGCCAGGAGGAGTCGGCACAGCAGTTCGCCGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACATCAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGCGTCGCGTCGGGTTCCCTGTCCATCGGTGATGTGCAGGCGTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGCTCGCGTCGATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCGGCCGAGCGGGTCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTGGCGGCCGAGCGGCCCGCGGAGCTGCGCGGGCGGGTGGCTCTGGAG
GGCGTGTCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCACTGACGGTGGAGCCCGGCCACACGGTCGC
CATCGTCGGCCCGACGGGCGCCGGCAAGACGACGCTGGTGAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGGCGCA
TCACCCTCGACGGTGTCGACATAGCGAGGATGTCCCGCGACGAACTGCGCGCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGGGCGTCGGGTGAGGTCACCCGCGGCGAGATCGAGGAGGC
GGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGCACCCTTCCCGACGGCTACGACACGGTGATCGACGACGAGGGCAGCG
GGGTCTCCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGACGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCGAAGCTGGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACCATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGCTCGATCGTCGAGCAGG
GTGCGCACACCGACCTGCTGGCGGCGGACGGGGCCTACGCGCGGCTGTACAAGGCACAGTTCGCGCAGGCACTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.67

84.891

0.371

Multiple sequence alignment