Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MRS49_RS16760 Genome accession   NZ_CP094294
Coordinates   3233872..3234156 (+) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus velezensis strain AP3     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3228872..3239156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MRS49_RS16740 - 3230116..3231024 (+) 909 WP_032874760.1 ketopantoate reductase family protein -
  MRS49_RS16745 - 3231054..3232286 (-) 1233 WP_007409644.1 aminopeptidase -
  MRS49_RS16750 - 3232387..3232521 (-) 135 WP_003154559.1 protein YkpC -
  MRS49_RS16755 mreBH 3232593..3233600 (-) 1008 WP_032875216.1 cell shape-determining protein MreBH -
  MRS49_RS16760 abrB 3233872..3234156 (+) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MRS49_RS16765 - 3234329..3235633 (+) 1305 WP_032874761.1 ATP-binding protein -
  MRS49_RS16770 - 3235635..3236462 (+) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  MRS49_RS16775 ktrC 3236503..3237168 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  MRS49_RS16780 ade 3237317..3239050 (+) 1734 WP_032874763.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=668695 MRS49_RS16760 WP_003154557.1 3233872..3234156(+) (abrB) [Bacillus velezensis strain AP3]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=668695 MRS49_RS16760 WP_003154557.1 3233872..3234156(+) (abrB) [Bacillus velezensis strain AP3]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment