Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG713_RS24085 Genome accession   NZ_CP108987
Coordinates   5445428..5446426 (+) Length   332 a.a.
NCBI ID   WP_054244055.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00723     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5440428..5451426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG713_RS24060 (OG713_24055) - 5440598..5441245 (+) 648 WP_020131925.1 TetR/AcrR family transcriptional regulator -
  OG713_RS24065 (OG713_24060) - 5441511..5443049 (+) 1539 WP_054244052.1 MFS transporter -
  OG713_RS24070 (OG713_24065) - 5443063..5443572 (-) 510 WP_054244053.1 MarR family transcriptional regulator -
  OG713_RS24075 (OG713_24070) - 5443793..5444602 (+) 810 WP_314222220.1 class III extradiol ring-cleavage dioxygenase -
  OG713_RS24080 (OG713_24075) - 5444703..5445242 (-) 540 WP_405964038.1 GNAT family N-acetyltransferase -
  OG713_RS24085 (OG713_24080) rpoS 5445428..5446426 (+) 999 WP_054244055.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OG713_RS24090 (OG713_24085) - 5447360..5448064 (+) 705 WP_054244056.1 helix-turn-helix domain-containing protein -
  OG713_RS24095 (OG713_24090) - 5448061..5449221 (-) 1161 WP_405964039.1 helix-turn-helix transcriptional regulator -
  OG713_RS24100 (OG713_24095) - 5449284..5450843 (+) 1560 WP_385250302.1 MFS transporter -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 37320.07 Da        Isoelectric Point: 4.9765

>NTDB_id=668692 OG713_RS24085 WP_054244055.1 5445428..5446426(+) (rpoS) [Streptomyces sp. NBC_00723]
MATRAVARRKSANGETTDAARSVRAHGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFAQQVLDGDEESRSV
ATREELETLVAESERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIATELGSTPERVTDVLDWARDPVSLNMAVDDQGETQF
GDLLEDTSAVSPEQSVMTLLRSEELDGLIDRLEPRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELK
KLARDTGFEAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=668692 OG713_RS24085 WP_054244055.1 5445428..5446426(+) (rpoS) [Streptomyces sp. NBC_00723]
ATGGCAACCCGTGCCGTCGCCCGTCGCAAGTCCGCCAACGGCGAGACGACCGACGCGGCCCGCAGTGTTCGCGCCCATGG
CGGCGAGATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAAATCGCGCGCACACCTCTGCTCGACGCCGCCAAGG
AAGTCGAGTTGTCACAGATCATCGAGGCGGGTGTCTTCGCGCAGCAGGTCCTCGACGGCGACGAGGAGTCGCGGTCGGTA
GCCACGCGCGAAGAACTTGAAACCCTGGTCGCCGAGAGCGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTCCGGTT
GGTCGTCGCGGTGGCCCGCCGCTACCCCCGCAGCGGTCTCCCGCTCCTCGACCTCATCCAGGAGGGCAACGCCGGTCTGG
TCCGCGCGGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGGATCCGTCAGGCCATC
ACGCGCTCGATAGCGGACCAGTCGCGCACGATCCGCCTGCCCGTCCACCTGGTGGAGGAGCTCGGCCGGATCCGTCGTGT
CCAGCGCGAGTTCAACCGCGAGAACGGCCGTGACCCCGAGCCCGCCGAGATCGCGACCGAACTCGGCTCGACGCCGGAGC
GCGTCACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGGCGGTCGACGACCAGGGTGAGACCCAGTTC
GGCGACCTGCTGGAGGACACGTCCGCGGTCTCGCCGGAGCAGTCCGTCATGACCCTGCTGCGCAGCGAGGAGTTGGACGG
CCTCATCGACCGTCTCGAGCCGCGCACGGCTTCCATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGCACCC
TGACCGAGGTCGGCAAGGAACACGGTCTGACGCGGGAACGCATCCGCCAGATCGAGAAGCACGCCCTGCTGGAACTGAAG
AAGCTGGCCCGCGACACGGGCTTCGAGGCAGCGGCGTAA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(269-321)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 region 3 (Sigma70_r3)

(179-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.134

90.06

0.361