Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG713_RS01745 Genome accession   NZ_CP108987
Coordinates   400017..401009 (-) Length   330 a.a.
NCBI ID   WP_405962162.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00723     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 395017..406009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG713_RS01730 (OG713_01760) - 396428..396931 (+) 504 WP_385247840.1 ATP-binding protein -
  OG713_RS01735 (OG713_01765) - 397671..398507 (+) 837 WP_054244582.1 alpha/beta fold hydrolase -
  OG713_RS01740 (OG713_01770) - 398664..399362 (+) 699 WP_405962161.1 type 1 glutamine amidotransferase domain-containing protein -
  OG713_RS01745 (OG713_01775) cytR 400017..401009 (-) 993 WP_405962162.1 LacI family DNA-binding transcriptional regulator Regulator
  OG713_RS01750 (OG713_01780) - 401340..403055 (+) 1716 WP_405962163.1 discoidin domain-containing protein -
  OG713_RS01755 (OG713_01785) - 403216..404586 (+) 1371 WP_054244578.1 DUF1996 domain-containing protein -
  OG713_RS01760 (OG713_01790) - 404613..405164 (+) 552 WP_405962164.1 DUF305 domain-containing protein -
  OG713_RS01765 (OG713_01795) - 405357..405587 (+) 231 Protein_352 Dyp-type peroxidase domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35171.08 Da        Isoelectric Point: 6.5072

>NTDB_id=668636 OG713_RS01745 WP_405962162.1 400017..401009(-) (cytR) [Streptomyces sp. NBC_00723]
MKRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVHELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELEAAGKRLVLMLAESDQSRTRVEQYVAGGHVDGVMLVALHGTDPLPAALARQGLPLVSFNRTSAQDVP
YVALDNAGGAALAVNHLLQRGRRRIAAITGPLDLYEARERLDGYRQTLRDTGRRSIVALGDFTRASGAEAMRQLLGDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVVGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLRLIEGGPTDPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=668636 OG713_RS01745 WP_405962162.1 400017..401009(-) (cytR) [Streptomyces sp. NBC_00723]
ATGAAACGACCCACTCTCGAAGTGGTCGCGGCCCGGGCAGGCGTGTCCAAGTCGAGCGTCTCCCGCGTCATCAACGGCGA
GACGACGGTCGCTCCGCAGATCCGGGACGTCGTCATGCGAGCCGTGCACGAACTGGGCTACGTGCCCAACGGCGCTGCCC
GCAACCTCGTCACCCGCCGCACGGACACACTGGCCGTGGTCGTCTCCGACCCGCCTCAGGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAACTCGAGGCGGCGGGAAAACGGCTGGTGCTCATGCTCGCCGAATC
GGACCAGAGCCGGACCAGAGTGGAGCAGTACGTCGCCGGCGGGCATGTGGACGGCGTGATGCTCGTAGCCCTGCACGGCA
CGGATCCACTGCCGGCCGCGCTGGCCAGACAGGGCCTGCCACTCGTCTCCTTCAACCGCACTTCCGCCCAGGACGTGCCG
TACGTGGCCCTGGACAACGCCGGCGGAGCGGCCCTTGCCGTGAATCACCTTCTCCAACGGGGCCGACGCCGGATCGCCGC
CATCACCGGACCGCTCGACCTCTACGAGGCGCGCGAGCGTCTCGACGGCTACCGCCAGACACTACGGGACACCGGCCGTC
GCTCCATCGTGGCGCTGGGCGACTTCACCAGAGCCTCCGGCGCCGAAGCCATGCGCCAACTCCTGGGGGACGACCCCGAC
CTCGACGCCGTGTTCGCGGCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTCCACCAAGCCGGACGACGCGTCCC
GGAAGACGTGGCCGTTGTCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCACTCACCTCGGTGCGCAGCC
CGATGGCCGATCAGGCAACCGCCGCGGTCCACCTGCTCCTCCGCCTCATCGAAGGCGGTCCCACGGACCCGGTGATCATG
CCGAACGAACTCGTGGTCCGCGAGTCGACTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.799

100

0.367

Multiple sequence alignment