Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHB17_RS13690 Genome accession   NZ_CP108985
Coordinates   3012477..3014402 (+) Length   641 a.a.
NCBI ID   WP_330480470.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00724     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3007477..3019402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB17_RS13675 (OHB17_13750) - 3008695..3009000 (+) 306 WP_313941539.1 YtxH domain-containing protein -
  OHB17_RS13680 (OHB17_13755) - 3009061..3010506 (+) 1446 WP_330480469.1 FGGY family carbohydrate kinase -
  OHB17_RS13685 (OHB17_13760) rcrP 3010744..3012477 (+) 1734 WP_326744329.1 ABC transporter ATP-binding protein Regulator
  OHB17_RS13690 (OHB17_13765) rcrQ 3012477..3014402 (+) 1926 WP_330480470.1 ABC transporter ATP-binding protein Regulator
  OHB17_RS13695 (OHB17_13770) - 3014419..3015537 (-) 1119 WP_030970270.1 RNA polymerase sigma factor -
  OHB17_RS13700 (OHB17_13775) dnaG 3015763..3017664 (-) 1902 WP_330480471.1 DNA primase -
  OHB17_RS13705 (OHB17_13780) - 3017815..3019074 (-) 1260 WP_330480472.1 FAD/NAD(P)-binding oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69121.56 Da        Isoelectric Point: 5.2050

>NTDB_id=668568 OHB17_RS13690 WP_330480470.1 3012477..3014402(+) (rcrQ) [Streptomyces sp. NBC_00724]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRMPEGT
TKEQAVEGLRKTNSGLADLLSGVDFTPGLGIDFDAVGNVLLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADLLGSVSLEK
VSFRYEPDKPLIENLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRSGIGMVLQDTW
LFGGSIADNIAYGASREVTREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=668568 OHB17_RS13690 WP_330480470.1 3012477..3014402(+) (rcrQ) [Streptomyces sp. NBC_00724]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGGACTTCAAGGGGTCGTCGAAGCG
ACTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTGTACGGGATGCTGGCGGCCTGTGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTGGTGTTCGCCGGGGTCATCGGCCGGCGGATGCCCGAGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACCAACAGCGGTCTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
GGGCCTCGGCATCGACTTCGATGCGGTGGGCAACGTACTGCTGACGGCGCTGGCGGTCTACGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGTTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCTCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGGTCATGATGTTCT
GGATCTCGCCGCTGCTGGCCCTGGTCGCTCTGGTGACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATAGCCGTC
GTCGGTGGGCTGCGGGTCGCGTCGGGTGCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCGGACCCCGTGACGGGTGAGCGCCCGGCGGATCTGCTCGGCAGTGTCTCGCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTTATCGAGAATCTGTCGCTGAACGTCGAGCCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGTGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACCGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGTCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCCCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGATGCGCAGGGGGCTTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.738

83.463

0.365