Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHB17_RS13685 Genome accession   NZ_CP108985
Coordinates   3010744..3012477 (+) Length   577 a.a.
NCBI ID   WP_326744329.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00724     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3005744..3017477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB17_RS13655 (OHB17_13730) - 3007121..3007318 (-) 198 WP_313937171.1 hypothetical protein -
  OHB17_RS13675 (OHB17_13750) - 3008695..3009000 (+) 306 WP_313941539.1 YtxH domain-containing protein -
  OHB17_RS13680 (OHB17_13755) - 3009061..3010506 (+) 1446 WP_330480469.1 FGGY family carbohydrate kinase -
  OHB17_RS13685 (OHB17_13760) rcrP 3010744..3012477 (+) 1734 WP_326744329.1 ABC transporter ATP-binding protein Regulator
  OHB17_RS13690 (OHB17_13765) rcrQ 3012477..3014402 (+) 1926 WP_330480470.1 ABC transporter ATP-binding protein Regulator
  OHB17_RS13695 (OHB17_13770) - 3014419..3015537 (-) 1119 WP_030970270.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62883.97 Da        Isoelectric Point: 5.5462

>NTDB_id=668567 OHB17_RS13685 WP_326744329.1 3010744..3012477(+) (rcrP) [Streptomyces sp. NBC_00724]
MLIKLLRAYLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILEYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVKPVRELRAHGHLEVRAADFRYPGAEEPVLRSVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668567 OHB17_RS13685 WP_326744329.1 3010744..3012477(+) (rcrP) [Streptomyces sp. NBC_00724]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGCCCGTACAAAAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAAGGGGACACCGGCTACA
TCCTGGAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCGGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGCACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTACCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGCGGCGCCAACACCGAGTTGACCGACGTGGCGCTCTCCACCGGGCGTCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAACGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCAAGCCGGTGCGGGAACTGCGCGCTCACGGTCATCTGGAGGTGCGGGCCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGAGCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACACTGCTCGGCCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTGCGG
ACGCTGGAGCCGGCGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAACGACTC
GCGATCGCGAGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGTCGGGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.909

99.133

0.406