Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG338_RS23445 Genome accession   NZ_CP108983
Coordinates   5222701..5223495 (-) Length   264 a.a.
NCBI ID   WP_405939185.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00726     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5217701..5228495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG338_RS23430 (OG338_23440) - 5217916..5218674 (+) 759 WP_405940511.1 GNAT family N-acetyltransferase -
  OG338_RS23435 (OG338_23445) - 5218735..5220570 (+) 1836 WP_405939183.1 IucA/IucC family protein -
  OG338_RS23440 (OG338_23450) - 5220621..5222591 (+) 1971 WP_405939184.1 ATP-dependent DNA helicase -
  OG338_RS23445 (OG338_23455) dinR/lexA 5222701..5223495 (-) 795 WP_405939185.1 transcriptional repressor LexA Regulator
  OG338_RS23450 (OG338_23460) nrdR 5224014..5224526 (+) 513 WP_405939186.1 transcriptional regulator NrdR -
  OG338_RS23455 (OG338_23465) - 5224690..5227593 (+) 2904 WP_405939187.1 vitamin B12-dependent ribonucleotide reductase -
  OG338_RS23460 (OG338_23470) - 5227692..5228228 (-) 537 WP_405939188.1 TerD family protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28622.39 Da        Isoelectric Point: 6.9854

>NTDB_id=668534 OG338_RS23445 WP_405939185.1 5222701..5223495(-) (dinR/lexA) [Streptomyces sp. NBC_00726]
MTTTADSAIITAQDRSQSRLEPVHAMNDSVTNTESPEPGRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=668534 OG338_RS23445 WP_405939185.1 5222701..5223495(-) (dinR/lexA) [Streptomyces sp. NBC_00726]
GTGACCACGACCGCAGACAGTGCCATCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGAGCCCGGAGCCCGGGCGCCCAGCGCGCTCGCTTCCCGGACGGCCTCCCGGAATCCGGG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTCATCCGGGATTCCGTACAGCGGCGCGGCTATCCG
CCGTCGATGCGGGAGATCGGTCAGGCGGTGGGTCTTTCCAGCACCTCCTCCGTAGCCCATCAGCTGATGGCGCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCACGCAGCCGA
CGGACACCACGGGCAAGCCCGCCGCCTCGTATGTGCCGCTGGTGGGCCGGATCGCCGCCGGTGGGCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTGGTGGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
TTCGATGATCGAGGCCGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAAC
GCCGCGTACCAGCCGATCCCCGGCGACGAGGCCACGATCCTCGGCAAGGTCGTCGCGGTACTGCGCAGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371