Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG338_RS07895 Genome accession   NZ_CP108983
Coordinates   1756950..1758881 (+) Length   643 a.a.
NCBI ID   WP_405936636.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00726     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1751950..1763881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG338_RS07880 (OG338_07885) - 1753253..1753558 (+) 306 WP_403998952.1 YtxH domain-containing protein -
  OG338_RS07885 (OG338_07890) - 1753636..1755081 (+) 1446 WP_405936634.1 FGGY family carbohydrate kinase -
  OG338_RS07890 (OG338_07895) rcrP 1755217..1756950 (+) 1734 WP_405936635.1 ABC transporter ATP-binding protein Regulator
  OG338_RS07895 (OG338_07900) rcrQ 1756950..1758881 (+) 1932 WP_405936636.1 ABC transporter ATP-binding protein Regulator
  OG338_RS07900 (OG338_07905) rpoS 1758920..1759963 (-) 1044 WP_405936637.1 RNA polymerase sigma factor Regulator
  OG338_RS07905 (OG338_07910) dnaG 1760119..1762023 (-) 1905 WP_405936638.1 DNA primase -
  OG338_RS07910 (OG338_07915) - 1762130..1763389 (-) 1260 WP_405936639.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69105.55 Da        Isoelectric Point: 5.3015

>NTDB_id=668491 OG338_RS07895 WP_405936636.1 1756950..1758881(+) (rcrQ) [Streptomyces sp. NBC_00726]
MAGPGGRMMAGGAPTERSMDFKGSAKRLLKRFAAEKNTLYVMLLAVACSVGLSVVGPKILGKATDLVFAGVVGRSMDAGT
TKEQAVEGLRRSNSGLADMLSGVDFTPGQGIDFGAVGDILLMALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIIGVLVMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEADPAKGEGEHPGILRGSVAL
EHVSFRYDPEKPLIEDLSLNVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIAKMSRADLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVSRERIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLDAKGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=668491 OG338_RS07895 WP_405936636.1 1756950..1758881(+) (rcrQ) [Streptomyces sp. NBC_00726]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGAGCGGTCCATGGACTTCAAGGGGTCCGCGAAGCG
GCTGCTGAAGCGCTTCGCCGCCGAGAAGAACACCCTGTACGTGATGCTGCTCGCGGTCGCGTGCAGCGTCGGGCTCTCCG
TGGTCGGCCCGAAGATCCTCGGCAAGGCGACGGACCTGGTCTTCGCCGGGGTCGTCGGCCGGTCGATGGACGCGGGGACG
ACCAAGGAGCAGGCCGTGGAGGGCCTGCGCAGGAGCAACAGCGGGCTGGCCGACATGCTGTCCGGGGTGGACTTCACGCC
GGGGCAGGGCATCGACTTCGGCGCGGTCGGCGACATCCTGCTGATGGCGCTCGCGGTGTACGTCGGCGCGGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTCTCGTACTTCGACCGCGCCAAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCATCGGCGTGCTGGTGATGATGTTCT
GGATCTCGCCACTCCTTGCGCTGGTCGCGCTGGTGACCGTGCCGCTCTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGC
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAC
CCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGGT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGATCGCGGTG
GTCGGCGGGCTCCGGGTGGCGTCCGGGGCGCTGTCGATCGGTGATGTGCAGGCGTTCATCCAGTATTCGCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGTGTCGCGTCGGCAGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGAGGCCGACCCGGCGAAGGGCGAGGGCGAGCACCCCGGCATCCTGCGCGGCAGCGTCGCGCTG
GAGCATGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTGTCGCTGAACGTCGAACCGGGCCACACGGT
CGCGATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCC
GGATCACGCTGGACGGCGTGGACATCGCGAAGATGTCCCGGGCGGACCTGCGCTCGGGCATCGGCATGGTGCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGGGCATCCGGCGACGTCAGCCGTGAGCGCATCGAGGA
GGCGGCGCGGGCGGCCCACGCGGACCGTTTCATCCGGACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGGGTCAGCGCGGGCGAGAAGCAGCTGATCACGATCGCCCGGGCGTTCCTGTCCGACCCGGTGATACTCGTGCTGGAC
GAGGCGACCAGCTCCGTCGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGGGCCTGGCGCACGGCCGTACCAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTCATGGAGAACGGCTCGATCGTGGAGC
AGGGCACGCACGACGAACTGCTGGACGCGAAGGGCGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(58-350)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.774

82.426

0.361

Multiple sequence alignment