Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG338_RS07890 Genome accession   NZ_CP108983
Coordinates   1755217..1756950 (+) Length   577 a.a.
NCBI ID   WP_405936635.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00726     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1750217..1761950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG338_RS07860 (OG338_07865) tsaD 1751528..1752583 (+) 1056 WP_405940351.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  OG338_RS07880 (OG338_07885) - 1753253..1753558 (+) 306 WP_403998952.1 YtxH domain-containing protein -
  OG338_RS07885 (OG338_07890) - 1753636..1755081 (+) 1446 WP_405936634.1 FGGY family carbohydrate kinase -
  OG338_RS07890 (OG338_07895) rcrP 1755217..1756950 (+) 1734 WP_405936635.1 ABC transporter ATP-binding protein Regulator
  OG338_RS07895 (OG338_07900) rcrQ 1756950..1758881 (+) 1932 WP_405936636.1 ABC transporter ATP-binding protein Regulator
  OG338_RS07900 (OG338_07905) rpoS 1758920..1759963 (-) 1044 WP_405936637.1 RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62692.83 Da        Isoelectric Point: 5.7533

>NTDB_id=668490 OG338_RS07890 WP_405936635.1 1755217..1756950(+) (rcrP) [Streptomyces sp. NBC_00726]
MLIKLLRAYLGPYKKPIAVLVVFQLLQTCATLYLPTLNADIIDNGVVKGDTGYILQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSSREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGISVSLIVRKMRPLFRQMQKRLDTVNRVLREQITGNRVIRAFVRDGYEEGRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVEPVRELRAHGHLEVRGADFRYPGAEEPVLRAVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGADVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVQALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRTALGRETAEATVVIVAQRVSTIREADRIIVLDEGRVVGTGTHHELMDGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668490 OG338_RS07890 WP_405936635.1 1755217..1756950(+) (rcrP) [Streptomyces sp. NBC_00726]
GTGCTCATAAAACTCCTGCGGGCCTATCTCGGTCCGTACAAGAAACCGATCGCGGTGCTGGTCGTCTTCCAGCTGTTGCA
GACCTGCGCCACGCTCTACCTGCCGACGCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTCCAGTACGGCGGCGTGATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGCGCC
CGCACCGCGTCCGCGCTCGGGCGGGACGTGCGGGCGTCGGTCTTCGACCGGGTGCAGTCCTTCTCCTCGCGCGAGGTCGG
CCGGTTCGGCGCCCCGTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGGATCATCATGGCGCTGGGCCAGGATGTGCCGCTCTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGGATCTCGGTCAGCCTGATCGTGCGGAAGATGCGTCCGCTGTTCCGGCAGATGCA
GAAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTGCGCGACG
GCTACGAGGAGGGGCGCTTCCGGGGTGCCAACACCGAGCTGACGGACGTGGCGCTGTCGACCGGCCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCCATCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACGGAGTCCAGCGTCGTCCCG
CCGGTCGAGCCGGTGCGCGAGCTGCGCGCCCACGGGCATCTGGAGGTGCGCGGCGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGGGCGGTGGAGCTGGTGGCACGGCCGGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGGCTCGTGCCCCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGGCCGATGTGCGG
ACGCTGGATCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTCGCGAC
GAATCTGCGGTACGGGAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCCCAGGCGAAGGAGTTCG
TCCAGGCCCTGGAGCACGGGCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGGCTC
TCGATCGCGCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGTACGGCGCTCGGGCGGGAGACCGCCGAGGCGACCGTGGTGATCGTGGCCCAGCGGGTCTCCACCATCC
GGGAGGCCGACCGGATCATCGTGCTGGACGAGGGGCGGGTCGTCGGGACCGGCACCCATCACGAGCTGATGGACGGCAAT
GACACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.826

99.653

0.397