Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   MOW14_RS06330 Genome accession   NZ_CP094258
Coordinates   1300098..1300595 (+) Length   165 a.a.
NCBI ID   WP_104490624.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT201     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1295098..1305595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW14_RS06300 (MOW14_06300) kdsB 1295943..1296707 (+) 765 WP_104488987.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MOW14_RS06305 (MOW14_06305) - 1296716..1297699 (+) 984 WP_075166783.1 DNA polymerase III subunit delta' -
  MOW14_RS06310 (MOW14_06310) - 1297711..1298052 (+) 342 WP_005177501.1 PilZ domain-containing protein -
  MOW14_RS06315 (MOW14_06315) - 1298082..1298855 (+) 774 WP_005177502.1 TatD family hydrolase -
  MOW14_RS06320 (MOW14_06320) - 1298916..1299530 (+) 615 WP_005177503.1 TetR family transcriptional regulator -
  MOW14_RS06325 (MOW14_06325) - 1299536..1300108 (+) 573 WP_180006533.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MOW14_RS06330 (MOW14_06330) xcpV 1300098..1300595 (+) 498 WP_104490624.1 type II secretion system minor pseudopilin GspI Machinery gene
  MOW14_RS06335 (MOW14_06335) xcpW 1300592..1301227 (+) 636 WP_152342358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  MOW14_RS06340 (MOW14_06340) gspK 1301273..1302220 (+) 948 WP_075174516.1 type II secretion system minor pseudopilin GspK -
  MOW14_RS06345 (MOW14_06345) - 1302368..1302964 (+) 597 WP_005177512.1 6-carboxytetrahydropterin synthase -
  MOW14_RS06350 (MOW14_06350) ung 1303006..1303719 (+) 714 WP_005177514.1 uracil-DNA glycosylase -
  MOW14_RS06355 (MOW14_06355) - 1303716..1304840 (+) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  MOW14_RS06360 (MOW14_06360) tadA 1304844..1305365 (+) 522 WP_180134083.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18537.29 Da        Isoelectric Point: 10.3756

>NTDB_id=668423 MOW14_RS06330 WP_104490624.1 1300098..1300595(+) (xcpV) [Acinetobacter indicus strain BDT201]
MKNRLFSAFLSPDLQKLNRLFSSCSTSAYRLRAHPHQTRFKRIAGFTLLEVMVALAIFATAAMALTQVAMQYTQSTSHAI
LRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPNVQRVEVQVSLFNPDTGQVEAGITHLVFFN
HRVAQ

Nucleotide


Download         Length: 498 bp        

>NTDB_id=668423 MOW14_RS06330 WP_104490624.1 1300098..1300595(+) (xcpV) [Acinetobacter indicus strain BDT201]
ATGAAGAATAGATTATTTTCAGCGTTCTTGTCGCCTGATCTGCAAAAACTAAACCGGCTTTTCTCCAGCTGTTCAACATC
CGCGTACCGATTACGAGCACATCCGCATCAGACCCGATTCAAGCGTATTGCCGGTTTTACCTTGCTGGAAGTAATGGTGG
CACTGGCGATTTTTGCTACAGCTGCTATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCGACCTCTCATGCCATT
TTAAGAACCAAAGCGCAGTTTGTGGCCTTAAACGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGGGTACGCA
ATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCGACCATTAGCCCGAATGTGCAGC
GGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGTTGAAGCCGGCATCACCCATTTGGTGTTTTTTAAT
CATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(41-65)

Type II secretion system (T2SS), protein I (T2SSI)

(82-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

78.151

72.121

0.564

Multiple sequence alignment