Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   MOW14_RS01245 Genome accession   NZ_CP094258
Coordinates   265396..265722 (+) Length   108 a.a.
NCBI ID   WP_242898184.1    Uniprot ID   -
Organism   Acinetobacter indicus strain BDT201     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 260396..270722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOW14_RS01220 (MOW14_01220) hemC 261075..261992 (+) 918 WP_034598116.1 hydroxymethylbilane synthase -
  MOW14_RS01225 (MOW14_01225) - 261994..262773 (+) 780 WP_075167812.1 uroporphyrinogen-III synthase -
  MOW14_RS01230 (MOW14_01230) - 262770..263615 (+) 846 WP_168370317.1 hypothetical protein -
  MOW14_RS01235 (MOW14_01235) - 263618..264811 (+) 1194 WP_242898183.1 heme biosynthesis protein HemY -
  MOW14_RS01240 (MOW14_01240) - 264822..265250 (+) 429 WP_171432368.1 thioesterase family protein -
  MOW14_RS01245 (MOW14_01245) hns 265396..265722 (+) 327 WP_242898184.1 H-NS histone family protein Regulator
  MOW14_RS01250 (MOW14_01250) gspN 265886..266626 (+) 741 WP_104473370.1 type II secretion system protein N -
  MOW14_RS01255 (MOW14_01255) - 266626..267462 (+) 837 WP_168370319.1 type II secretion system protein N -
  MOW14_RS01260 (MOW14_01260) gspD 267503..269752 (+) 2250 WP_016659681.1 type II secretion system secretin GspD -
  MOW14_RS01265 (MOW14_01265) - 269819..270526 (+) 708 WP_168370320.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12256.97 Da        Isoelectric Point: 8.4694

>NTDB_id=668411 MOW14_RS01245 WP_242898184.1 265396..265722(+) (hns) [Acinetobacter indicus strain BDT201]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVSELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=668411 MOW14_RS01245 WP_242898184.1 265396..265722(+) (hns) [Acinetobacter indicus strain BDT201]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGTCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment