Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG242_RS02460 Genome accession   NZ_CP108981
Coordinates   551661..552665 (+) Length   334 a.a.
NCBI ID   WP_405896563.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00727     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 546661..557665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG242_RS02450 (OG242_02430) - 548350..550620 (+) 2271 WP_405901483.1 AbfB domain-containing protein -
  OG242_RS02455 (OG242_02435) - 550666..551505 (-) 840 WP_405896562.1 phytanoyl-CoA dioxygenase family protein -
  OG242_RS02460 (OG242_02440) cytR 551661..552665 (+) 1005 WP_405896563.1 LacI family DNA-binding transcriptional regulator Regulator
  OG242_RS02465 (OG242_02445) - 552749..556024 (-) 3276 WP_405896564.1 LamG-like jellyroll fold domain-containing protein -
  OG242_RS02470 (OG242_02450) - 556257..557354 (-) 1098 WP_405896565.1 NADH:flavin oxidoreductase/NADH oxidase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 35075.00 Da        Isoelectric Point: 6.1070

>NTDB_id=668410 OG242_RS02460 WP_405896563.1 551661..552665(+) (cytR) [Streptomyces sp. NBC_00727]
MAARLKDVAALAGVSVRTVSNVVSNAAAVAPATRARVLAAVEELGYRPNLAARNLRQGRTGLIGVAVPEIHSPYFGALTG
LLIDAAQERGWTVLLERTGGRADLERRLLDGSEGHQVDGMIISPWSAPPAELASLAGGLPLVVLGELDPHGSIDHVALDN
VAAARDAARHLVAAGRRRVAAIGLQSALGHGTAELRAEGFRQGLAEAGLGPVAEVEVADLHREEGARALRELLLMPERPD
AVFCFSDELALGALRAAGEQGVRVPEDLALVGFDDIEDGRFSTPSLTTVSPDRAQIAERAVQCLSERVLGRLSGLPARRI
VVPHRLLVRESSAG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=668410 OG242_RS02460 WP_405896563.1 551661..552665(+) (cytR) [Streptomyces sp. NBC_00727]
GTGGCAGCGAGACTCAAGGACGTCGCCGCGCTCGCGGGCGTGTCCGTCAGAACCGTCTCCAACGTGGTGAGCAACGCGGC
CGCCGTCGCCCCGGCGACCCGGGCCCGTGTGCTGGCCGCGGTGGAGGAGCTGGGCTACCGGCCCAACCTCGCCGCCCGTA
ACCTCCGCCAGGGCCGTACCGGCCTCATCGGCGTGGCCGTCCCGGAGATCCACTCCCCCTACTTCGGCGCGCTCACGGGT
CTCCTCATCGACGCGGCCCAGGAGCGCGGCTGGACCGTGCTCCTGGAGCGCACCGGGGGCCGGGCGGACCTGGAGCGGCG
GCTGCTCGACGGCTCCGAGGGCCATCAGGTGGACGGGATGATCATCAGCCCCTGGTCGGCTCCCCCGGCCGAACTGGCCT
CGCTCGCGGGCGGGCTGCCGCTCGTCGTCCTCGGCGAACTCGATCCGCACGGGTCCATCGACCATGTGGCGCTGGACAAC
GTGGCGGCGGCCCGGGACGCCGCGCGGCACCTGGTGGCGGCCGGCCGCCGTCGGGTCGCCGCGATCGGGCTGCAGTCCGC
GCTGGGGCACGGCACGGCGGAGCTGCGCGCCGAGGGGTTCCGGCAGGGGCTCGCGGAGGCGGGGCTCGGCCCGGTCGCCG
AGGTGGAGGTGGCGGACCTGCACCGGGAGGAGGGGGCGCGGGCGCTGCGCGAGCTGCTGCTTATGCCGGAGCGTCCGGAC
GCGGTGTTCTGCTTCAGCGACGAACTGGCCCTGGGGGCGCTGCGGGCGGCCGGTGAGCAGGGGGTGCGGGTGCCCGAAGA
CCTGGCGTTGGTGGGCTTCGACGACATCGAGGACGGGAGGTTCTCCACGCCTTCGCTGACCACGGTCTCCCCGGACCGGG
CGCAGATCGCGGAGCGGGCGGTGCAGTGCCTGAGCGAGCGCGTGCTCGGCCGGCTTTCCGGGCTGCCTGCACGCCGGATC
GTCGTCCCGCACCGTCTGCTGGTCCGCGAGAGCAGCGCCGGTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

37.574

100

0.38