Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG397_RS28370 Genome accession   NZ_CP108980
Coordinates   6663185..6664918 (-) Length   577 a.a.
NCBI ID   WP_405917192.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00728     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6658185..6669918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG397_RS28360 (OG397_28340) - 6659821..6661125 (+) 1305 WP_405917191.1 RNA polymerase sigma factor -
  OG397_RS28365 (OG397_28345) rcrQ 6661257..6663185 (-) 1929 WP_328555692.1 ABC transporter ATP-binding protein Regulator
  OG397_RS28370 (OG397_28350) rcrP 6663185..6664918 (-) 1734 WP_405917192.1 ABC transporter ATP-binding protein Regulator
  OG397_RS28375 (OG397_28355) - 6665083..6666537 (-) 1455 WP_328555694.1 FGGY family carbohydrate kinase -
  OG397_RS28380 (OG397_28360) - 6666612..6666917 (-) 306 WP_328555695.1 YtxH domain-containing protein -
  OG397_RS28400 (OG397_28380) - 6667672..6668361 (-) 690 WP_405917193.1 GMC family oxidoreductase -
  OG397_RS28405 (OG397_28390) - 6668307..6669260 (-) 954 WP_405917194.1 GMC family oxidoreductase -
  OG397_RS28410 (OG397_28395) - 6669257..6669388 (-) 132 WP_328555697.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62737.10 Da        Isoelectric Point: 6.5093

>NTDB_id=668392 OG397_RS28370 WP_405917192.1 6663185..6664918(-) (rcrP) [Streptomyces sp. NBC_00728]
MLIRLLRTHLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILTFGALMIGISLTQVVCNIGAVYFGA
RTASAVGRDIRGAVFDRVQSFSAREMGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPTLGICVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDGYEKERFKGANTELTETSLATGRMLAL
MFPIVMTVVNLSSIAVVWFGAHRIDSGQMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTESSVVP
PAAPVLELRRHGHLEIREAGFRYPGAEEPVLKSVDLVARPGEVTAVIGSTGSGKSTLLGMIPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPEATDEELWHALEVAQAKGFVEQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALTAETAEATVVIVAQRVSTIREADRIVVLDEGRVVGSGRHRELMAEN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668392 OG397_RS28370 WP_405917192.1 6663185..6664918(-) (rcrP) [Streptomyces sp. NBC_00728]
GTGCTCATACGACTCCTGCGGACCCACCTCAGTCCGTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACCCTGAACGCGCACATCATCGACAACGGTGTCGTGAAGGGTGACACGGGCTACA
TCCTGACCTTCGGCGCCCTGATGATCGGCATCTCGCTGACCCAGGTCGTCTGCAACATCGGGGCCGTCTACTTCGGGGCC
CGTACGGCCTCCGCGGTCGGCCGGGACATCCGGGGCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCACGTGAGATGGG
CCACTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCGGCACCGATCATGTGTGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTCGTCGCCGTGGTGCCGACCCTCGGCATCTGCGTGACGCTCATCGTGCGCCGGCTGCGCCCGCTGTTCCGCACCATGCA
GGTGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCCTTCGTGCGCGACG
GCTACGAGAAGGAGCGCTTCAAGGGCGCCAACACCGAACTCACCGAGACGTCGCTGGCCACCGGCCGGATGCTGGCCCTG
ATGTTCCCGATCGTCATGACGGTCGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CCAGATGCAGATCGGCGACCTGACCGCGTTCCTGGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTCTCCACCGAGAGCAGCGTGGTCCCG
CCGGCCGCGCCCGTCCTGGAGCTGCGTCGGCACGGCCACCTGGAGATCCGGGAGGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAAGTCCGTCGACCTGGTCGCGCGCCCCGGCGAGGTGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCGACCCTGCTCGGCATGATCCCCCGCCTGTTCGACGCCACCGACGGCCAGGTGCTGGTCGACGGCGTGGACGTGGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGGCTGGTCCCGCAGAAGCCGTACCTGTTCGCCGGGACCGTCGCCAC
GAACCTGCGGTACGGCAACCCGGAGGCGACCGACGAGGAGCTCTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TCGAACAGCTGGAGAACGGGCTCGACTCGCCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGCCAGCGGCAGCGCCTG
GCCATCGCCCGCACCCTCGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCCCTGACCGCGGAGACCGCGGAGGCCACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGAGGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCAGCGGACGGCATCGTGAACTGATGGCCGAGAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.175

100

0.395

Multiple sequence alignment