Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MON37_RS07920 Genome accession   NZ_CP094242
Coordinates   1676165..1677544 (-) Length   459 a.a.
NCBI ID   WP_003740864.1    Uniprot ID   A0A0C1EJG1
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671165..1682544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS07905 (MON37_07905) guaA 1672871..1674436 (-) 1566 WP_036491748.1 glutamine-hydrolyzing GMP synthase -
  MON37_RS07910 (MON37_07910) - 1674563..1674901 (-) 339 WP_003760104.1 hypothetical protein -
  MON37_RS07915 (MON37_07915) smpB 1675234..1675680 (-) 447 WP_003760109.1 SsrA-binding protein SmpB -
  MON37_RS07920 (MON37_07920) radA 1676165..1677544 (-) 1380 WP_003740864.1 DNA repair protein RadA Machinery gene
  MON37_RS07925 (MON37_07925) - 1677639..1679141 (-) 1503 WP_039406871.1 S41 family peptidase -
  MON37_RS07930 (MON37_07930) - 1679406..1681115 (-) 1710 WP_039406868.1 peptidoglycan DD-metalloendopeptidase family protein -
  MON37_RS07935 (MON37_07935) - 1681313..1681864 (+) 552 WP_003763874.1 CreA family protein -
  MON37_RS07940 (MON37_07940) - 1681877..1682425 (+) 549 WP_019271440.1 YqgE/AlgH family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49482.97 Da        Isoelectric Point: 6.8217

>NTDB_id=668356 MON37_RS07920 WP_003740864.1 1676165..1677544(-) (radA) [Morococcus cerebrosus strain CIP 81.93]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNEKEFPNLKIFGVSSLQEAIEICRDAEN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=668356 MON37_RS07920 WP_003740864.1 1676165..1677544(-) (radA) [Morococcus cerebrosus strain CIP 81.93]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTTGCCGCACCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCGACCGTCCAATCCCTATCCGCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGCGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGCAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAACGTTTGGAACTGCCCACCGAAGGCGTAAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAAGCGGCC
TTGAAACAGCATCAGCCCGAAGTCGTCGTCATCGACTCCATCCAAACCATGTATTCCGACCAAATCACCTCCGCCCCCGG
CTCCGTATCGCAGGTACGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCTGGCCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATCCGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAATTGGGCGTATTTGCCAT
GACAGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACCCCAGGTTCGT
GTGTTTTGGTCACGCAGGAAGGCAGCCGCCCGCTTCTGGTCGAAATCCAGGCATTGGTCGATGACGCGCACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTTCTCAACCGCCACGGCGGCATCGC
CTGTTTTGACCAAGACGTGTTCCTCAACGCCGTTGGCGGCGTCAAAATCGGCGAGCCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTGCCTGAAAAAATGGTCGCCTTCGGCGAAATCGGACTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGCTTCAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAACGAAAAAGAGTTTCCGAATCTAAAAATCTTCGGCGTTTCCAGCCTTCAGGAAGCCATCGAAATCT
GCCGCGATGCGGAAAATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1EJG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis SK321

47.368

99.346

0.471
  radA Streptococcus pneumoniae D39

47.046

99.564

0.468
  radA Streptococcus pneumoniae TIGR4

47.046

99.564

0.468
  radA Streptococcus pneumoniae R6

47.046

99.564

0.468
  radA Streptococcus pneumoniae Rx1

47.046

99.564

0.468
  radA Streptococcus mitis NCTC 12261

47.149

99.346

0.468

Multiple sequence alignment