Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   MON37_RS06470 Genome accession   NZ_CP094242
Coordinates   1391920..1393677 (-) Length   585 a.a.
NCBI ID   WP_039410214.1    Uniprot ID   A0A0C1E2N6
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1379415..1393677 1391920..1393677 within 0


Gene organization within MGE regions


Location: 1379415..1393677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS06405 (MON37_06405) - 1379415..1379600 (-) 186 WP_039410746.1 antitoxin VbhA family protein -
  MON37_RS12305 - 1379651..1379779 (-) 129 WP_278250489.1 hypothetical protein -
  MON37_RS06410 (MON37_06410) - 1379891..1380505 (-) 615 WP_039410744.1 hypothetical protein -
  MON37_RS06415 (MON37_06415) - 1380577..1381791 (-) 1215 WP_003764834.1 IscS subfamily cysteine desulfurase -
  MON37_RS06420 (MON37_06420) iscR 1381821..1382267 (-) 447 WP_003764827.1 Fe-S cluster assembly transcriptional regulator IscR -
  MON37_RS06425 (MON37_06425) - 1382620..1383792 (+) 1173 WP_039410741.1 alpha-hydroxy acid oxidase -
  MON37_RS06430 (MON37_06430) - 1383925..1384932 (+) 1008 WP_242883552.1 IS5 family transposase -
  MON37_RS06435 (MON37_06435) - 1385147..1385929 (-) 783 WP_039410232.1 RNA methyltransferase -
  MON37_RS06440 (MON37_06440) - 1386116..1386691 (-) 576 WP_234396110.1 sigma-E factor negative regulatory protein -
  MON37_RS06445 (MON37_06445) rpoE 1386709..1387308 (-) 600 WP_039410227.1 RNA polymerase sigma factor RpoE -
  MON37_RS06450 (MON37_06450) tilS 1387392..1388690 (-) 1299 WP_242883554.1 tRNA lysidine(34) synthetase TilS -
  MON37_RS06455 (MON37_06455) - 1388829..1389788 (-) 960 WP_039410222.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha -
  MON37_RS06460 (MON37_06460) - 1390007..1390408 (+) 402 WP_039410219.1 RNA-binding S4 domain-containing protein -
  MON37_RS06465 (MON37_06465) - 1390557..1391675 (-) 1119 WP_039410217.1 hypothetical protein -
  MON37_RS06470 (MON37_06470) recD 1391920..1393677 (-) 1758 WP_039410214.1 exodeoxyribonuclease V subunit alpha Machinery gene

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63763.80 Da        Isoelectric Point: 5.6164

>NTDB_id=668353 MON37_RS06470 WP_039410214.1 1391920..1393677(-) (recD) [Morococcus cerebrosus strain CIP 81.93]
MAENTADDLNLAAAQAAGHLLERCVPEDAAVLTPYVLRLFAALQNGHSFVWLDEGEAEELAGLAPTVGQGTSPLVLQGRK
LFLGRMWQLEHDLAAEIKRLAEAEVEPVDWMSASQNLSGWFADKGSAGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLL
GLVCTNSATRLPRIALAAPTGKAAAHMARALHRAVDGFEMPDAVRNHLSALEGQTVHRLLKLRPPQMLPAFDGNHPLPLD
VLVVDEASMLDVSLLLHLLRAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRRTVLDKETADQLSIYLPEHGFPVEENPPV
LSQNVAQLTVSHRFGADSGIGCLARAVVSGKSGEGWAQFALFPDELEIREGRLKQQAELLYRKHEKYWQAVDKNDVALAF
GHAADVVVLAAWRQDAEAFNEEYCRYLQRKHRAGADTPWFAGQIIMIARNDYTLEVFNGDIGLIMPDAESANGLAAYFPN
ADGFKKIAISRLPQFDSAFAMTVHKSQGSEYREVWLLPPSGKIEQGGDDALSGLNNALLYTAITRARERFVFWGNEEQWR
LAVETRKTRRTALGDILDAMFVPKA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=668353 MON37_RS06470 WP_039410214.1 1391920..1393677(-) (recD) [Morococcus cerebrosus strain CIP 81.93]
ATGGCTGAGAATACTGCCGATGATTTGAACCTTGCCGCCGCACAAGCGGCCGGGCATTTGCTGGAGCGTTGCGTACCGGA
GGATGCTGCGGTGCTGACGCCGTATGTGTTGCGGCTGTTTGCTGCTTTGCAGAACGGGCATTCGTTTGTTTGGCTGGATG
AGGGCGAGGCGGAGGAATTGGCGGGATTGGCGCCGACGGTCGGGCAGGGCACGTCGCCGTTGGTGTTGCAGGGCAGAAAG
CTGTTTTTGGGGCGGATGTGGCAGCTCGAGCATGATTTGGCGGCTGAAATCAAGCGTTTGGCAGAAGCGGAAGTCGAGCC
TGTGGATTGGATGAGCGCGTCGCAAAACTTGTCCGGCTGGTTTGCCGACAAAGGCAGCGCAGGGCAGCGGGATGCGGCGG
GGCTTGCCCTGCTTCAAGCGTTTATGCTGATTACGGGCGGGCCGGGTACGGGCAAGACGACGACTGTGGCGAAACTTTTG
GGGCTGGTTTGCACCAACTCTGCCACGCGCCTGCCGCGTATTGCGCTTGCCGCGCCGACGGGCAAGGCGGCGGCGCATAT
GGCGCGCGCGCTGCATCGGGCAGTGGACGGTTTCGAGATGCCGGATGCGGTGCGCAATCATTTGTCCGCGCTGGAAGGGC
AGACGGTCCACCGCCTTTTGAAACTGCGCCCGCCGCAAATGCTGCCTGCGTTTGACGGCAACCACCCGCTGCCTTTGGAT
GTGTTGGTGGTGGATGAGGCTTCGATGTTGGATGTTTCCCTGCTGCTTCACTTGCTGCGTGCGATTCCGTCGGGCTGCCG
CGTGATTTTTTTGGGCGACGAGTTCCAACTGCCTTCGGTCGGCGTCGGCGCGGTATTGGCGGCGTTGTCGAGACGGACGG
TTTTGGATAAGGAGACGGCGGATCAGCTGAGCATTTATCTGCCGGAACACGGTTTCCCCGTGGAGGAAAATCCGCCGGTT
TTGTCGCAAAACGTCGCGCAACTGACAGTCAGCCACCGTTTCGGCGCAGACAGCGGCATCGGCTGTCTGGCTAGGGCGGT
CGTATCGGGCAAGAGCGGGGAAGGTTGGGCGCAGTTTGCCTTGTTCCCCGACGAACTGGAAATCCGCGAAGGTCGTCTGA
AACAGCAGGCGGAGCTGCTTTACCGCAAACACGAAAAATACTGGCAGGCAGTCGATAAAAACGATGTGGCGCTGGCGTTC
GGACACGCGGCGGATGTGGTCGTTTTGGCGGCATGGCGGCAGGACGCGGAGGCGTTCAACGAAGAGTATTGCCGTTATCT
GCAACGCAAACATCGGGCGGGCGCGGATACGCCGTGGTTCGCGGGACAAATCATCATGATTGCGCGCAACGACTATACGC
TGGAAGTGTTCAACGGCGACATCGGGCTGATTATGCCCGACGCGGAATCGGCGAACGGCTTGGCGGCGTATTTTCCGAAT
GCGGACGGTTTCAAAAAAATCGCCATCAGCCGCCTGCCGCAGTTTGATTCCGCGTTCGCCATGACCGTGCATAAAAGCCA
AGGTTCGGAATATCGGGAAGTCTGGCTGCTGCCGCCGTCGGGGAAAATAGAGCAGGGCGGAGATGACGCGCTGTCTGGCT
TAAACAATGCGCTGCTCTACACCGCCATCACCCGCGCGCGGGAACGCTTCGTCTTTTGGGGAAATGAAGAACAATGGCGG
TTGGCGGTGGAGACCCGCAAAACCCGCCGCACGGCATTGGGCGACATCTTGGACGCGATGTTCGTGCCGAAAGCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-549)

AAA domain (AAA_30)

(126-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1E2N6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

63.167

96.068

0.607

Multiple sequence alignment