Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG397_RS12845 Genome accession   NZ_CP108980
Coordinates   3093613..3094389 (+) Length   258 a.a.
NCBI ID   WP_103549644.1    Uniprot ID   A0A2I0SRN7
Organism   Streptomyces sp. NBC_00728     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3088613..3099389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG397_RS12830 (OG397_12820) - 3088630..3089307 (-) 678 WP_328553026.1 DUF6215 domain-containing protein -
  OG397_RS12835 (OG397_12825) - 3089478..3092375 (-) 2898 WP_328553027.1 vitamin B12-dependent ribonucleotide reductase -
  OG397_RS12840 (OG397_12830) nrdR 3092543..3093094 (-) 552 WP_328553028.1 transcriptional regulator NrdR -
  OG397_RS12845 (OG397_12835) dinR/lexA 3093613..3094389 (+) 777 WP_103549644.1 transcriptional repressor LexA Regulator
  OG397_RS12850 (OG397_12840) - 3094967..3096985 (-) 2019 WP_405915932.1 ATP-dependent DNA helicase -
  OG397_RS12855 (OG397_12845) - 3097362..3098141 (-) 780 WP_328553030.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27977.71 Da        Isoelectric Point: 7.4755

>NTDB_id=668348 OG397_RS12845 WP_103549644.1 3093613..3094389(+) (dinR/lexA) [Streptomyces sp. NBC_00728]
MTTTADSATITAQDRSQGRLEPVHVMNEAANHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=668348 OG397_RS12845 WP_103549644.1 3093613..3094389(+) (dinR/lexA) [Streptomyces sp. NBC_00728]
GTGACCACCACCGCAGACAGCGCCACCATCACCGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGTGATGAA
CGAAGCCGCGAATCATGAGGGGCCCAAGCGCTCCCTGCCTGGCCGACCTCCAGGCATCCGGGCCGACAGCTCGGGACTCA
CGGACCGGCAACGCCGGGTGATCGAGGTGATCAGGGACTCCGTGCAGCGGCGCGGCTACCCACCGTCGATGCGGGAGATC
GGTCAGGCCGTCGGCCTTTCCAGTACCTCCTCGGTCGCGCATCAGCTCATGGCACTGGAGCGCAAGGGGTTCCTGCGCCG
AGACCCGCACCGCCCGCGTGCGTACGAGGTGCGGGGCTCCGACCAGTCCTCGGTGCAGCCGACGGACACGGCGGGCAAGC
CTGCCGCGTCCTATGTGCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGACGTT
TTCCCTCTCCCCCGCCAGTTGGTCGGCGACGGAGAGCTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCGACG
GCGAAGCCACGGTGAAGCGCTTCAAGCGCGAGGACGGACACGTGTGGCTGCTGCCGCACAACTCCGCGTACCAGCCGATC
CCCGGCGACGAGGCGACGATCCTCGGGAAGGTCGTCGCCGTACTGCGGAGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I0SRN7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372

Multiple sequence alignment