Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   MON37_RS04770 Genome accession   NZ_CP094242
Coordinates   1029633..1033268 (+) Length   1211 a.a.
NCBI ID   WP_039409903.1    Uniprot ID   A0A0C1E396
Organism   Morococcus cerebrosus strain CIP 81.93     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024633..1038268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON37_RS04735 (MON37_04735) - 1024639..1025157 (+) 519 WP_039409892.1 MarR family transcriptional regulator -
  MON37_RS04745 (MON37_04745) - 1025326..1025685 (+) 360 WP_082013663.1 NADH dehydrogenase -
  MON37_RS04750 (MON37_04750) - 1025774..1026163 (+) 390 WP_039409894.1 DoxX-like family protein -
  MON37_RS04755 (MON37_04755) - 1026160..1026642 (+) 483 WP_039409896.1 DUF2269 domain-containing protein -
  MON37_RS04760 (MON37_04760) - 1026683..1027522 (+) 840 WP_039409898.1 NAD-dependent epimerase/dehydratase family protein -
  MON37_RS04765 (MON37_04765) - 1027604..1029544 (+) 1941 WP_039409900.1 PEP/pyruvate-binding domain-containing protein -
  MON37_RS04770 (MON37_04770) recB 1029633..1033268 (+) 3636 WP_039409903.1 exodeoxyribonuclease V subunit beta Machinery gene
  MON37_RS04775 (MON37_04775) ftsH 1033519..1035465 (-) 1947 WP_039409906.1 ATP-dependent zinc metalloprotease FtsH -
  MON37_RS04780 (MON37_04780) - 1035530..1036150 (-) 621 WP_003762741.1 RlmE family RNA methyltransferase -
  MON37_RS04785 (MON37_04785) yhbY 1036259..1036543 (+) 285 WP_039409909.1 ribosome assembly RNA-binding protein YhbY -

Sequence

Protein


Download         Length: 1211 a.a.        Molecular weight: 136323.19 Da        Isoelectric Point: 4.9215

>NTDB_id=668344 MON37_RS04770 WP_039409903.1 1029633..1033268(+) (recB) [Morococcus cerebrosus strain CIP 81.93]
MSITIPAFDPLSIPIAGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVESILTVTFTKAATAELKTRLRARLDEVLQALE
SVEDTDNLSDDLEAYCQDNHPGDVFLTGLLKQALAQESRTRLIVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCRAPM
DVELTEDNRDRLLIPAQDFWRDRIVNHPVLAKLVFQRRQTPQTMLAAIQKFVSRPYLVFRRPEADLVAAQENFRKTWEKV
RSKLDALEATFWRIRPILDGNSYREKTFKTVFLELQSASQSDALPSFSKTTAEKLPMFAVEALASKVKKGNTPDAAAFAD
LQILANLGADSAAIAQAEEETLTLLHLDLLDHLNASLSEQKKTKRERGFDDLLLDVYDALTDNPQADSLAQAVAQNWRIA
LIDEFQDTDPLQYEIFRKIFISQNKPLFLVGDPKQAIYSFRGADIYAYLQAAADAQHSYTLATNYRSHAKLINGIGALFR
CKNRPFVLDGIDYTEVGAARSESRLSPPQTAIQIRWLNGKDDEVLNKDILRRRASEYCADEIAHTLNEAAEGRLKFKDRP
VVSGDIAVLVRTFNEGVMVAKALKTRGIQSVLLSRESVFTTPEALALAALLDYWLNPGQIGSLRFVLSGTLFGYDAQALY
QLNRNEAELLNWINTAAESVAIWRKSGIYAALQHFSSLHGIETGLLARGDERGLTNFHQLLECLSEEEGQSLSPAALHQW
LNDQISLAQDRSVGESGLLRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAKDMKPADWQILHTADHTTELLAKSQLND
EDRIHLADEEMAERLRLLYVALTRAEEQLVLYAAHCGDTADSPFAYLLEGSADSNRADTRRAYDQERKANKALGELQMLK
NNWLRFLNNPPEHTDFSFSEDAPQPTAAQNRHLSDDLYQAAVIPARGFQFIRHTSFTGLSRQVKTRDDEREELQPALDPA
ETAAETERSSETTLPVSDDLTNTDIHHFPRGANAGVCLHEMLEKFDFAQSAESQSSLIAETLTRYGFDPLWTDAVKQMLD
TCRKTRLVAQSLSEIPPERCLPEMGFTLYTEDFKLHDLRRWFARENSSLPPECIEAAERLDFQDVQGFLNGFIDMVCQDS
DDLVCIIDYKSNHLGDNAEAYTQQAMNEAVADHHYYLQALIYAIAVARYFKLRGKPLPKIAIRYLFLRGLDGTDNGIWQW
DLDTESLAQWL

Nucleotide


Download         Length: 3636 bp        

>NTDB_id=668344 MON37_RS04770 WP_039409903.1 1029633..1033268(+) (recB) [Morococcus cerebrosus strain CIP 81.93]
ATGTCAATCACCATTCCAGCCTTCGATCCCCTAAGCATCCCTATAGCAGGTACCAATCTGATTGAAGCTTCTGCCGGCAC
GGGCAAAACCTACGGCATTGCGGCTTTGTTCACGCGTTTGGTCGTGCTTGAGCAGATGCCTGTCGAAAGCATTTTGACCG
TTACTTTTACCAAGGCGGCAACGGCGGAATTGAAAACCCGTTTGCGCGCACGTTTGGACGAAGTATTGCAGGCTTTGGAG
AGCGTGGAGGATACGGACAATCTTTCAGACGACCTTGAAGCATACTGCCAAGACAATCATCCGGGCGATGTGTTTCTGAC
CGGTTTGCTCAAACAAGCATTGGCTCAAGAAAGTCGGACGCGGCTGATTGTCCGCCTCAAGGCCGCCATCGGACAATTCG
ACAACGCCGCGATTTATACCATTCACGGCTTCTGCCAACGCATTTTGCGCGATTATGCGTTTTTGTGCCGTGCGCCTATG
GATGTCGAGCTGACCGAAGACAACCGCGACCGCCTGCTGATTCCCGCTCAAGATTTTTGGCGCGACCGCATCGTCAATCA
TCCCGTTTTGGCGAAGCTGGTATTTCAACGCCGCCAAACGCCGCAAACCATGCTGGCGGCAATACAAAAGTTCGTCAGCC
GTCCGTATTTGGTTTTCAGACGACCCGAAGCAGACCTAGTCGCCGCGCAGGAAAACTTTCGGAAAACATGGGAAAAAGTG
CGTTCCAAACTGGACGCTTTAGAAGCAACATTCTGGCGCATCCGTCCGATATTAGATGGCAACTCATATCGTGAAAAAAC
ATTCAAAACCGTCTTTCTCGAACTCCAATCCGCCTCTCAATCCGATGCCCTTCCTTCTTTTAGCAAAACGACGGCAGAAA
AGCTGCCCATGTTTGCCGTAGAAGCTTTAGCGTCCAAGGTCAAAAAAGGCAACACTCCCGATGCTGCCGCCTTTGCTGAT
TTGCAGATATTGGCGAATCTCGGCGCAGACTCGGCTGCCATTGCGCAAGCCGAAGAAGAGACGCTTACCCTGCTCCACCT
CGACCTGCTCGACCATCTTAATGCCAGTCTGAGCGAACAGAAAAAAACCAAGCGCGAACGCGGTTTCGACGATTTGCTGC
TTGATGTTTATGACGCATTGACCGACAACCCGCAGGCAGATTCATTGGCTCAGGCGGTGGCGCAAAACTGGCGCATCGCC
TTGATTGACGAATTTCAAGACACCGACCCGCTGCAATACGAGATTTTCCGAAAAATCTTCATCAGCCAAAACAAGCCTTT
ATTCCTAGTCGGCGACCCGAAACAAGCCATTTACAGCTTTCGAGGCGCCGACATTTACGCCTATCTGCAAGCCGCAGCCG
ACGCGCAACACAGTTACACACTGGCAACCAATTACCGCAGCCATGCCAAGTTGATTAACGGCATAGGCGCATTGTTCCGC
TGCAAAAACCGCCCTTTCGTCTTGGACGGCATAGACTATACCGAAGTCGGCGCCGCACGTTCCGAAAGCCGGCTTTCGCC
GCCCCAAACTGCCATACAGATACGCTGGCTCAACGGCAAAGACGACGAAGTGCTCAACAAAGACATCTTGCGCCGCCGTG
CCTCCGAATATTGCGCCGACGAAATCGCCCACACGCTCAACGAAGCTGCCGAGGGTCGTCTGAAATTCAAAGACAGACCG
GTCGTTTCAGGCGATATTGCCGTCTTGGTCAGGACGTTTAACGAAGGCGTGATGGTGGCAAAAGCACTGAAAACGCGCGG
CATACAAAGCGTTTTGCTCTCAAGAGAATCGGTTTTCACCACGCCGGAAGCCCTTGCCCTTGCCGCGCTGTTGGATTATT
GGCTAAATCCCGGACAAATCGGCTCGCTGCGCTTCGTCTTGTCCGGCACATTGTTCGGCTACGACGCGCAAGCCCTGTAT
CAACTCAACCGCAACGAAGCCGAATTATTAAACTGGATAAACACCGCCGCCGAATCCGTCGCCATTTGGCGGAAAAGCGG
GATTTATGCCGCGCTGCAACACTTCTCCTCGTTGCACGGCATCGAAACCGGATTGCTTGCACGAGGTGACGAGCGCGGCC
TCACTAATTTCCATCAGCTTTTAGAGTGCCTCTCCGAAGAAGAAGGACAAAGCCTCAGTCCCGCTGCCCTACATCAATGG
CTCAACGACCAAATCAGTCTGGCGCAAGACCGATCTGTCGGCGAATCAGGGCTGTTACGGCTTGAAAGCGACGAAGCACT
GGTCAAAATTGTCACCATGCATGCCTCCAAAGGTTTGCAATATCCTTTGGTCTATTGCCCTTTCGTTTGGGACGCGAAAG
ACATGAAGCCCGCCGATTGGCAAATCCTCCACACTGCCGACCACACTACGGAACTGCTTGCCAAATCGCAACTCAACGAT
GAAGACCGCATCCACCTTGCCGACGAAGAAATGGCAGAACGCCTGCGCCTGCTGTACGTCGCGCTGACCCGTGCCGAAGA
GCAGCTTGTCCTTTATGCCGCCCATTGCGGCGATACCGCCGATTCCCCTTTTGCCTACTTGCTTGAAGGCAGCGCCGACA
GCAATCGGGCGGATACCCGCCGGGCCTATGACCAGGAACGCAAAGCAAACAAAGCCCTAGGCGAGCTGCAAATGCTGAAA
AACAACTGGCTGCGTTTCCTCAACAATCCCCCCGAACATACCGACTTCAGCTTTTCCGAAGACGCGCCGCAACCCACTGC
CGCGCAAAACCGCCATCTTTCAGACGACCTCTATCAAGCCGCCGTTATCCCCGCCCGCGGATTTCAGTTCATCCGACATA
CCAGCTTTACCGGCCTGAGCCGCCAAGTCAAAACCCGAGACGACGAACGCGAAGAATTACAACCCGCACTCGACCCCGCA
GAAACCGCCGCCGAAACAGAAAGGTCGTCTGAAACCACCCTCCCCGTTTCGGACGACCTCACAAACACCGACATCCACCA
TTTCCCTCGCGGCGCCAACGCCGGCGTCTGCTTGCATGAAATGTTGGAAAAATTCGACTTTGCCCAAAGTGCCGAAAGCC
AAAGCAGCCTGATAGCCGAAACCTTGACCCGCTACGGCTTCGACCCGCTCTGGACAGATGCCGTCAAACAAATGCTCGAC
ACCTGCCGTAAAACGCGCCTTGTTGCACAAAGCCTGTCTGAAATCCCACCCGAGCGCTGCCTTCCGGAAATGGGATTTAC
CCTCTACACCGAAGACTTCAAACTCCATGACCTTCGCCGCTGGTTTGCCCGCGAAAACAGCTCACTGCCACCGGAATGTA
TCGAAGCCGCAGAAAGATTGGATTTCCAAGACGTACAAGGTTTTCTCAATGGCTTCATCGACATGGTCTGCCAAGATTCA
GACGACCTCGTATGCATCATCGACTACAAATCCAACCATCTGGGCGACAACGCCGAAGCCTATACGCAACAAGCCATGAA
CGAAGCCGTAGCAGACCACCACTACTACCTGCAAGCGCTCATCTACGCCATCGCCGTAGCCCGCTATTTCAAACTGCGCG
GCAAACCGTTACCCAAAATCGCCATCCGATACCTCTTCCTGCGCGGATTGGACGGCACGGATAACGGCATCTGGCAATGG
GACTTGGATACCGAATCCTTAGCACAATGGCTGTAA

Domains

Predicted by InterproScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(16-455)

UvrD-like helicase C-terminal domain (UvrD_C)

(459-832)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(994-1189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C1E396

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

62.438

100

0.626

Multiple sequence alignment