Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   MON40_RS07140 Genome accession   NZ_CP094241
Coordinates   1476470..1478227 (+) Length   585 a.a.
NCBI ID   WP_003778772.1    Uniprot ID   A0AA36UIJ8
Organism   Neisseria macacae ATCC 33926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1471470..1483227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS07115 (MON40_07115) cmk 1471553..1472212 (-) 660 WP_003778764.1 (d)CMP kinase -
  MON40_RS07120 (MON40_07120) - 1472548..1473762 (+) 1215 WP_003778766.1 uracil-xanthine permease family protein -
  MON40_RS07125 (MON40_07125) - 1474106..1474669 (+) 564 WP_242925831.1 hypothetical protein -
  MON40_RS07130 (MON40_07130) - 1475152..1476096 (+) 945 WP_003778770.1 DnaJ C-terminal domain-containing protein -
  MON40_RS07135 (MON40_07135) - 1476108..1476401 (+) 294 WP_003778771.1 chaperone modulator CbpM -
  MON40_RS07140 (MON40_07140) recD 1476470..1478227 (+) 1758 WP_003778772.1 exodeoxyribonuclease V subunit alpha Machinery gene
  MON40_RS07145 (MON40_07145) - 1478472..1479590 (+) 1119 WP_003778773.1 hypothetical protein -
  MON40_RS07150 (MON40_07150) - 1479724..1480248 (-) 525 WP_003778774.1 CPCC family cysteine-rich protein -
  MON40_RS07155 (MON40_07155) - 1480434..1481507 (-) 1074 WP_003778776.1 sulfate/molybdate ABC transporter ATP-binding protein -
  MON40_RS07160 (MON40_07160) cysW 1481504..1482364 (-) 861 WP_003743550.1 sulfate ABC transporter permease subunit CysW -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63721.76 Da        Isoelectric Point: 5.6192

>NTDB_id=668312 MON40_RS07140 WP_003778772.1 1476470..1478227(+) (recD) [Neisseria macacae ATCC 33926]
MAENTADDLNLAAAQAAGHLLERCVPEHAAVLTPYVLRLFAALQNGHSFVWLDEGEAEELAGLAPTVGQGASPLVLQGRK
LFLGRMWQLEHDLAAEIKSLAEAEVEPVDWMSASQNLSGWFADKGSEGQRDAAGLALLQAFMLITGGPGTGKTTTVAKLL
GLVCTNSATRLPRIALAAPTGKAAAHMARALHRAVDGFEMPDAVRNHLSALEGQTVHRLLKLRPPQMLPAFDGSRPLPLD
VLVVDEASMLDVSLLLHLLRAIPSGCRVIFLGDEFQLPSVGVGAVLAALSRQTVLDKETAEQLSIYLPEHGFPVEENPPA
LSQNVAQLKVSHRFGADSGIGCLARAVVSGKSGEGWAQFALFPDELEIREGRLKQQAELLYRKHEKYWQAVDKNDVALAF
GHAADVVVLAAWRQDAEAFNEEYCRYLQRKHRAGADTPWFAGQIIMIARNDYTLEVFNGDIGLIMPDAESANGLAAYFPN
ADGFKKIAISRLPQFDSAFAMTVHKSQGSEYREVWLLPPSGKIEQGGDDALSGLNNALLYTAITRARERFVFWGNEEQWR
LAVETRKTRRTALGDILDAMFVPKA

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=668312 MON40_RS07140 WP_003778772.1 1476470..1478227(+) (recD) [Neisseria macacae ATCC 33926]
ATGGCTGAGAATACTGCCGATGATTTGAACCTTGCCGCCGCACAAGCGGCCGGGCATTTGCTGGAGCGTTGCGTACCGGA
GCATGCTGCGGTGCTGACGCCTTATGTGTTGCGGCTGTTTGCTGCTTTGCAGAACGGGCATTCGTTTGTTTGGCTGGATG
AGGGCGAGGCGGAGGAATTGGCGGGATTGGCGCCGACGGTCGGGCAGGGCGCGTCGCCGTTGGTGTTGCAGGGCAGAAAG
TTGTTTTTGGGGCGGATGTGGCAGCTCGAGCATGATTTGGCGGCTGAAATCAAGAGTTTGGCGGAGGCGGAAGTCGAGCC
TGTGGATTGGATGAGCGCGTCGCAAAACTTGTCCGGTTGGTTTGCCGACAAAGGCAGCGAAGGGCAGCGGGATGCGGCGG
GGCTTGCCCTGCTTCAAGCGTTTATGCTGATTACGGGCGGGCCGGGTACGGGCAAGACGACGACTGTGGCGAAACTTTTG
GGGCTGGTTTGCACCAACTCTGCCACGCGCCTGCCGCGTATCGCTCTGGCCGCACCGACGGGCAAGGCGGCGGCGCATAT
GGCACGCGCGCTGCATCGGGCGGTGGATGGTTTCGAGATGCCGGATGCGGTACGCAATCATTTGTCCGCGCTGGAAGGGC
AGACGGTTCACCGCCTTTTGAAACTGCGCCCGCCGCAAATGCTGCCTGCGTTTGACGGCAGCCGCCCGCTGCCTTTGGAT
GTGTTGGTGGTGGATGAGGCTTCGATGTTGGATGTTTCCCTGCTGCTTCACTTGCTGCGTGCGATTCCGTCGGGCTGCCG
CGTGATTTTTTTGGGCGACGAGTTCCAACTGCCCTCGGTCGGCGTCGGCGCGGTATTGGCGGCGTTGTCGAGACAGACGG
TTTTGGATAAGGAGACGGCGGAGCAACTGAGTATTTATCTGCCGGAACACGGTTTCCCCGTGGAGGAAAATCCGCCGGCT
TTGTCGCAAAACGTCGCGCAACTGAAGGTCAGCCACCGTTTCGGCGCAGACAGCGGCATCGGCTGTCTGGCTAGGGCGGT
CGTATCGGGCAAGAGCGGGGAAGGTTGGGCGCAGTTTGCCTTGTTCCCCGACGAGCTGGAAATCCGCGAAGGTCGTCTGA
AACAGCAGGCGGAGCTGCTTTACCGCAAACACGAAAAATACTGGCAGGCAGTCGATAAAAACGATGTGGCACTGGCGTTC
GGACACGCGGCGGATGTGGTCGTTTTGGCGGCATGGCGGCAGGACGCGGAGGCGTTCAACGAAGAGTATTGCCGTTATCT
GCAACGCAAACATCGGGCGGGCGCGGATACGCCGTGGTTCGCGGGACAAATCATCATGATTGCGCGCAACGACTATACGC
TGGAAGTGTTCAACGGCGATATCGGGCTGATTATGCCCGATGCGGAATCGGCGAACGGCTTGGCGGCATATTTTCCGAAT
GCGGACGGTTTCAAAAAAATCGCCATCAGCCGCCTGCCGCAGTTTGATTCCGCGTTCGCCATGACTGTGCATAAAAGCCA
GGGTTCGGAATATCGGGAAGTCTGGCTGCTGCCGCCGTCGGGGAAAATAGAGCAGGGCGGGGATGACGCGCTGTCGGGCT
TAAACAATGCGCTGCTTTACACCGCCATCACCCGCGCACGGGAACGCTTCGTCTTTTGGGGAAATGAAGAGCAATGGCGG
TTGGCGGTGGAAACCCGCAAAACCCGCCGCACGGCATTGGGCGACATCTTGGACGCGATGTTCGTACCGAAAGCTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(498-549)

AAA domain (AAA_30)

(126-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

63.345

96.068

0.609

Multiple sequence alignment