Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIC96_RS32725 Genome accession   NZ_CP108938
Coordinates   7353921..7355654 (-) Length   577 a.a.
NCBI ID   WP_330304401.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00775     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7348921..7360654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIC96_RS32715 (OIC96_32750) - 7350411..7351763 (+) 1353 WP_330304403.1 RNA polymerase sigma factor -
  OIC96_RS32720 (OIC96_32755) rcrQ 7351993..7353921 (-) 1929 WP_330304402.1 ABC transporter ATP-binding protein Regulator
  OIC96_RS32725 (OIC96_32760) rcrP 7353921..7355654 (-) 1734 WP_330304401.1 ABC transporter ATP-binding protein Regulator
  OIC96_RS32730 (OIC96_32765) - 7355853..7357307 (-) 1455 WP_330304400.1 FGGY family carbohydrate kinase -
  OIC96_RS32735 (OIC96_32770) - 7357500..7357805 (-) 306 WP_330304399.1 YtxH domain-containing protein -
  OIC96_RS32755 (OIC96_32790) - 7358506..7359345 (-) 840 WP_330304398.1 peptidoglycan recognition family protein -
  OIC96_RS32760 (OIC96_32795) - 7359411..7360628 (-) 1218 WP_330304397.1 MFS transporter -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62531.73 Da        Isoelectric Point: 5.9248

>NTDB_id=668310 OIC96_RS32725 WP_330304401.1 7353921..7355654(-) (rcrP) [Streptomyces sp. NBC_00775]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGAVMIGISLAQVVCNIGAVYFGA
RTAAAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIILALGLDVPLSAV
LVAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKERFRGANTELTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PTAPVVELRRHGHLEIREAGFRYPGAEEPVLRTIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGVDVA
TIEPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVDQLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALADETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=668310 OIC96_RS32725 WP_330304401.1 7353921..7355654(-) (rcrP) [Streptomyces sp. NBC_00775]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAGCCCATCGCCTTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTACCTGCCCACACTCAACGCGCACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGATACA
TCCTGTCCTTCGGCGCCGTGATGATCGGCATCTCGCTGGCGCAGGTCGTCTGCAACATCGGGGCCGTGTACTTCGGCGCC
CGTACGGCGGCGGCCGTCGGCCGGGACATCCGGGCCGCCGTCTTCGACCGCGTCCAGTCCTTCTCGGCTCGCGAGGTCGG
CCACTTCGGGGCGCCCTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CGCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCATCCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGCGGTG
CTGGTCGCCGTGGTGCCGGTCCTCGGCATCGGCGTGACCCTCATCGTGCGCAGGCTGCGCCCGCTGTTCCGGACCATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAATCGCGTGATCCGTGCCTTCGTGCGCGACG
ACTACGAGAAGGAGCGCTTCCGGGGCGCGAACACCGAGCTCACCGAGGTGTCGCTGGGCACCGGGCGGATGCTGGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGCATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGTGCCGAGCGCATCGAGGAGGTCCTCGGCACGAGCAGCAGCGTGGTCCCG
CCGACCGCGCCCGTCGTCGAGCTGCGCCGCCACGGCCACCTGGAGATCCGCGAGGCAGGGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTCCTGAGGACCATCGACCTGGTGGCCCGGCCCGGCGAGGTGACCGCCGTGATCGGTTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGGTCCCCCGCCTCTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCGTGGACGTCGCG
ACCATCGAGCCGAAGCTGCTGGCCAGGACGGTCGGCCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTGGCCAC
GAACCTCCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGACCAGCTGGAGAACGGCCTGGACTCCCCGATCGCGCAGGGCGGCACGAATGTGTCGGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGCCCCGAGATCTATCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCGACCGA
CGCGGCACTGCGGGCGGCGCTCGCCGACGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCGCCGGACGGCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.48

100

0.409