Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MON40_RS05405 Genome accession   NZ_CP094241
Coordinates   1119188..1120567 (-) Length   459 a.a.
NCBI ID   WP_003778096.1    Uniprot ID   A0A9X5U3W1
Organism   Neisseria macacae ATCC 33926     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1114188..1125567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS05385 (MON40_05385) - 1114937..1116238 (-) 1302 WP_039862946.1 hemolysin family protein -
  MON40_RS05390 (MON40_05390) - 1116324..1116677 (-) 354 WP_003778092.1 DUF5713 family protein -
  MON40_RS05395 (MON40_05395) - 1116824..1118008 (-) 1185 WP_003778094.1 NYN domain-containing protein -
  MON40_RS05400 (MON40_05400) - 1118076..1119062 (-) 987 WP_003762913.1 malate dehydrogenase -
  MON40_RS05405 (MON40_05405) radA 1119188..1120567 (-) 1380 WP_003778096.1 DNA repair protein RadA Machinery gene
  MON40_RS05410 (MON40_05410) - 1120662..1122164 (-) 1503 WP_003763010.1 S41 family peptidase -
  MON40_RS05415 (MON40_05415) - 1122429..1124183 (-) 1755 WP_003778098.1 peptidoglycan DD-metalloendopeptidase family protein -
  MON40_RS05420 (MON40_05420) - 1124367..1125011 (-) 645 WP_003778099.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49498.97 Da        Isoelectric Point: 6.8215

>NTDB_id=668304 MON40_RS05405 WP_003778096.1 1119188..1120567(-) (radA) [Neisseria macacae ATCC 33926]
MAKAPKTIYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSAVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTEGVNLLAEIRMEAIQTA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPLPEKMVAFGEIGLSGE
VRPVARGQERLKEAEKLGFKRAIVPKANMPRNEKEFPNLKIFGVSSLQEAIDICRDAEN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=668304 MON40_RS05405 WP_003778096.1 1119188..1120567(-) (radA) [Neisseria macacae ATCC 33926]
ATGGCAAAAGCCCCCAAAACCATCTACCAATGCACCGAATGCGGCGGCACTTCACCGAAATGGCAAGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACGCTTCAGGAAAGCCTGGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ATACCTCAACCGTCCAATCCCTCTCCGCCGTGACCGCTACCGAAGTGCCGCGCAATCCGACGGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGTGGCCTGGTTGACGGCGCGGTCATCCTGCTCGGTGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGAAAAGTGCTGTACGTTTCCGGCGAAGAATCCGCCCAACAGGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCCACCGAAGGCGTGAACCTGCTTGCCGAAATCCGCATGGAAGCGATTCAGACGGCA
TTGAAACAGCATCAGCCCGAAGTCGTCGTTATCGACTCCATCCAAACCATGTATTCCGACCAAATCACCTCCGCCCCCGG
CTCCGTATCGCAGGTACGCGAATGCGCCGCCCAACTGACGCGCATGGCGAAACAAATGGGCATCGCCATGATACTGGTCG
GACACGTTACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTCGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGCTTCGGCGCGGCAAACGAACTGGGCGTGTTCGCCAT
GACCGAAAACGGTTTGAAAGGCGTGTCCAACCCGTCCGCCATCTTCCTCGCCAGCTACCGCGACGACACGCCCGGTTCGT
GCGTTTTGGTCACACAGGAAGGCAGCCGCCCGCTTCTGGTCGAAATTCAGGCATTGGTCGATGATGCACACGGCTTCACC
CCCAAACGCCTCACCGTCGGCCTCGAACAAAACCGCCTCGCCATGCTGCTCGCCGTCCTCAACCGCCACGGCGGCATCGC
CTGCTTCGACCAAGACGTGTTCCTCAATGCCGTCGGCGGCGTCAAAATCGGAGAACCCGCCGCCGACCTCGCCGTCATCC
TCGCCATGCTCTCCAGCTTCCGCAACCGCCCGCTGCCCGAAAAAATGGTCGCCTTCGGCGAAATCGGACTAAGCGGCGAA
GTCCGCCCCGTCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAACTCGGTTTCAAACGCGCCATCGTCCCCAAAGC
CAATATGCCGCGCAACGAAAAAGAGTTCCCAAACCTAAAAATCTTCGGCGTTTCCAGCCTTCAGGAAGCCATCGACATCT
GCCGCGATGCGGAAAATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus mitis NCTC 12261

47.473

99.129

0.471
  radA Streptococcus mitis SK321

47.253

99.129

0.468
  radA Streptococcus pneumoniae TIGR4

46.93

99.346

0.466
  radA Streptococcus pneumoniae D39

46.93

99.346

0.466
  radA Streptococcus pneumoniae Rx1

46.93

99.346

0.466
  radA Streptococcus pneumoniae R6

46.93

99.346

0.466

Multiple sequence alignment