Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   MON40_RS02025 Genome accession   NZ_CP094241
Coordinates   421239..422459 (+) Length   406 a.a.
NCBI ID   WP_003779857.1    Uniprot ID   A0AA36UGV3
Organism   Neisseria macacae ATCC 33926     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 419019..432212 421239..422459 within 0


Gene organization within MGE regions


Location: 419019..432212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MON40_RS02010 (MON40_02010) - 419019..419378 (+) 360 WP_003761526.1 hypothetical protein -
  MON40_RS02015 (MON40_02015) - 419383..419817 (+) 435 WP_003779850.1 protein YgfX -
  MON40_RS02020 (MON40_02020) folC 419952..421226 (+) 1275 WP_242925981.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  MON40_RS02025 (MON40_02025) tpc 421239..422459 (+) 1221 WP_003779857.1 SPOR domain-containing protein Machinery gene
  MON40_RS02030 (MON40_02030) - 422452..422958 (+) 507 WP_003779858.1 CvpA family protein -
  MON40_RS02035 (MON40_02035) purF 423305..424849 (+) 1545 WP_003769279.1 amidophosphoribosyltransferase -
  MON40_RS02040 (MON40_02040) greB 425091..425582 (+) 492 WP_003779860.1 transcription elongation factor GreB -
  MON40_RS02045 (MON40_02045) - 425877..426668 (+) 792 WP_003779864.1 formate/nitrite transporter family protein -
  MON40_RS02050 (MON40_02050) - 426671..426781 (+) 111 Protein_387 IS5/IS1182 family transposase -
  MON40_RS02055 (MON40_02055) dusA 426893..427906 (+) 1014 WP_003779866.1 tRNA dihydrouridine(20/20a) synthase DusA -
  MON40_RS02060 (MON40_02060) - 428243..428731 (+) 489 WP_003779868.1 group II truncated hemoglobin -
  MON40_RS02065 (MON40_02065) - 428986..430221 (+) 1236 WP_242925982.1 hypothetical protein -
  MON40_RS02070 (MON40_02070) - 430292..431338 (+) 1047 WP_003779875.1 SEL1-like repeat protein -
  MON40_RS02075 (MON40_02075) - 431409..432212 (+) 804 WP_003779877.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43831.99 Da        Isoelectric Point: 9.7653

>NTDB_id=668294 MON40_RS02025 WP_003779857.1 421239..422459(+) (tpc) [Neisseria macacae ATCC 33926]
MSDNKQNEVLTGYEQLKRRNRRRLVMASGLVAASTVLLGVALSTGPENKPEENAQTTTIQQNNANAEPANLADATVLEPS
TKEDLEAAAEAAKNADAEVADKPQETAAPEQTAQAEPQPDAPPAAPEDVGPPLVLINDTLSDSDIKGLEESEKIQKAEAA
KREAAERRAEERRRNREEQRKAQQLQAQEAAEREANAAARKRALQAAKAEKAERAAAAERNKLAQLEKAEKAVAERKALK
AKEEAAAKHKAAAEKAKETVTASASEPKERIRVDASKYEKIETANKKASAVREAEAKVAKAKTEQTAKAEKTATAERSSE
KAKTKTAEVKSGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEVMTDKGKVYRVKSGAYKNAYDAERDLNKLRVHGIA
GQVTNE

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=668294 MON40_RS02025 WP_003779857.1 421239..422459(+) (tpc) [Neisseria macacae ATCC 33926]
ATGTCTGACAATAAGCAAAATGAAGTTCTGACCGGTTACGAACAGCTCAAACGCCGCAACCGACGCCGCTTGGTTATGGC
ATCGGGGTTGGTGGCGGCATCGACCGTTTTATTGGGCGTCGCCCTGTCAACCGGACCGGAAAACAAGCCAGAAGAAAACG
CCCAAACTACAACCATCCAACAGAATAATGCCAACGCAGAACCTGCCAACCTGGCGGATGCGACCGTGTTGGAACCCTCT
ACCAAAGAAGATTTGGAAGCAGCGGCGGAAGCGGCCAAAAATGCCGATGCCGAAGTAGCGGACAAACCGCAGGAAACCGC
CGCGCCGGAGCAAACTGCGCAAGCCGAGCCGCAACCTGATGCGCCGCCAGCCGCGCCCGAAGATGTAGGCCCGCCTTTGG
TGCTGATTAACGATACGCTGTCAGACAGCGACATCAAAGGTTTGGAAGAATCCGAGAAAATCCAAAAAGCAGAAGCCGCC
AAACGCGAAGCAGCCGAGCGCCGCGCGGAAGAGCGCCGTCGTAATCGTGAAGAGCAGCGTAAAGCGCAGCAGCTCCAAGC
ACAAGAAGCAGCGGAGCGCGAAGCCAATGCCGCAGCGCGTAAACGTGCGCTTCAAGCTGCCAAAGCCGAGAAGGCCGAGC
GTGCCGCCGCAGCCGAGCGCAACAAGCTGGCACAGTTGGAAAAAGCCGAGAAAGCCGTTGCCGAACGTAAGGCATTAAAA
GCCAAAGAAGAAGCGGCGGCGAAACACAAAGCGGCAGCGGAAAAAGCCAAAGAAACCGTCACAGCATCCGCATCCGAACC
TAAAGAAAGAATTCGGGTAGATGCTTCCAAATATGAAAAAATTGAAACGGCCAACAAAAAAGCTTCCGCGGTAAGGGAAG
CCGAAGCGAAAGTTGCCAAAGCCAAAACTGAGCAGACGGCCAAGGCAGAGAAAACTGCTACTGCCGAAAGGTCGTCTGAA
AAGGCAAAAACCAAAACCGCCGAAGTCAAATCAGGTAAAAAAGCCGCCATTCAGGCTGGTTATGCTGAAAAAGAACGCGC
CTTGAGCCTGCAACGCAAAATGAAAGCGGCAGGTATCGACTCAACCATTACCGAAGTGATGACGGATAAAGGCAAGGTTT
ACCGTGTCAAATCAGGCGCATACAAAAACGCCTACGACGCCGAACGCGACTTGAACAAACTGCGCGTACACGGCATTGCC
GGACAGGTAACCAATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

49.51

100

0.498

Multiple sequence alignment