Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIB37_RS27220 Genome accession   NZ_CP108882
Coordinates   6026223..6027002 (-) Length   259 a.a.
NCBI ID   WP_330460233.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00820     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6021223..6032002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIB37_RS27210 (OIB37_27220) - 6023027..6023734 (+) 708 WP_330460231.1 GNAT family N-acetyltransferase -
  OIB37_RS27215 (OIB37_27225) - 6024082..6026061 (+) 1980 WP_330460232.1 ATP-dependent DNA helicase -
  OIB37_RS27220 (OIB37_27230) dinR/lexA 6026223..6027002 (-) 780 WP_330460233.1 transcriptional repressor LexA Regulator
  OIB37_RS27225 (OIB37_27235) nrdR 6027653..6028204 (+) 552 WP_330460234.1 transcriptional regulator NrdR -
  OIB37_RS27230 (OIB37_27240) - 6028370..6031264 (+) 2895 WP_330460235.1 vitamin B12-dependent ribonucleotide reductase -
  OIB37_RS27235 (OIB37_27245) - 6031371..6031904 (-) 534 WP_330460236.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28061.82 Da        Isoelectric Point: 7.0666

>NTDB_id=668230 OIB37_RS27220 WP_330460233.1 6026223..6027002(-) (dinR/lexA) [Streptomyces sp. NBC_00820]
MTTTADSATITAQDRVQGRVEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVTVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=668230 OIB37_RS27220 WP_330460233.1 6026223..6027002(-) (dinR/lexA) [Streptomyces sp. NBC_00820]
GTGACCACCACCGCAGACAGTGCCACCATCACCGCCCAGGACCGCGTCCAGGGCCGAGTCGAGCCGGTACATGCGATGAA
TGAAGCCACGAATCCCGAGGGGCACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGGGCGGACAGCTCGGGGCTGA
CCGACCGCCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGACGCGGCTACCCGCCGTCGATGCGGGAGATC
GGCCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTCGCGCACCAGCTGATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCTCGCGCGTACGAGGTGCGCGGCTCGGACCAGGCCGTGACCGTCCAGCCCACGGACACGGCCGGCA
AGCCCGCCGCGTCGTACGTCCCGCTCGTCGGCCGTATCGCGGCCGGTGGCCCGATCCTCGCCGAGGAGTCGGTCGAGGAC
GTCTTCCCCCTCCCCCGGCAGCTCGTGGGTGACGGCGAGCTGTTCGTACTCAAGGTCGTCGGCGACTCCATGATCGAGGC
CGCGATCTGTGACGGTGACTGGGTCACCGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTGGCCGCCATGCTCG
ACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCGGCCTACGAGCCC
ATCCCCGGCGACGACGCGACCATCCTGGGCAAGGTCGTCGCCGTGCTGCGCCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.467

0.378