Detailed information NTG0668203

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OIB37_RS19960
• Genome accession: NZ_CP108882
• Coordinates: 4413238..4415844 (+)
• Length: 868 a.a.
• NCBI ID: WP_330461902.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00820
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 4408238..4420844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIB37_RS19935 (OIB37_19955)	-	4408902..4409879 (-)	978	WP_330458961.1	helix-turn-helix transcriptional regulator	-
OIB37_RS19940 (OIB37_19960)	-	4409876..4410871 (-)	996	WP_330458962.1	helix-turn-helix transcriptional regulator	-
OIB37_RS19945 (OIB37_19965)	-	4410868..4411878 (-)	1011	WP_330458963.1	helix-turn-helix transcriptional regulator	-
OIB37_RS19950 (OIB37_19970)	-	4412241..4412537 (+)	297	WP_330461901.1	(2Fe-2S)-binding protein	-
OIB37_RS19955 (OIB37_19975)	-	4412694..4413107 (-)	414	WP_330458964.1	PPOX class F420-dependent oxidoreductase	-
OIB37_RS19960 (OIB37_19980)	clpC	4413238..4415844 (+)	2607	WP_330461902.1	ATP-dependent chaperone ClpB	Regulator
OIB37_RS19965 (OIB37_19985)	-	4416440..4416997 (+)	558	WP_330458965.1	YbjN domain-containing protein	-
OIB37_RS19970 (OIB37_19990)	-	4417161..4418354 (-)	1194	WP_330458966.1	pyridoxal phosphate-dependent aminotransferase	-
OIB37_RS19975 (OIB37_19995)	-	4419164..4419688 (+)	525	WP_330458967.1	DUF2617 family protein	-

Sequence

Protein

• Length: 868 a.a.
• Molecular weight: 94977.33 Da
• Isoelectric Point: 4.6995

>NTDB_id=668203 OIB37_RS19960 WP_330461902.1 4413238..4415844(+) (clpC) [Streptomyces sp. NBC_00820]
MDAELTNRSREAINAASQRAVTDGHADLTPAHLLLALLAGQGRQENENITDLLAAVDADQAAVRAGAERVLAGLPSVTGS
TVAPPQPSRELLAVLADADERAKELGDEYLSTEHLLIGIAARGGAAGEVLTAQGADARKLQEAFQKARGGRRVTTADPEG
QYKALEKFGTDFTAAAREGRLDPVIGRDHEIRRVVQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVKGDVPESLKNKR
LVSLDLGAMVAGAKYRGEFEERLKAVLSEIKDSDGQIITFIDELHTVVGAGAGGDSAMDAGNMLKPMLARGELRMVGATT
LDEYRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAATLSDRYITSRFLPDKAIDLVD
EAASRLRMEIDSSPVEIDELQRSVDRLKMEELAIAKETDPASVARLEKLRRDLADKEEELRGLTVRWEKEKQSLNRVGEL
KEKLDDLRGQAERAQRDGDFDTAAKLLYGEIPELEKELEAASEAEEEAARDTMVKEEVGSDDIADVVAAWTGIPAGRLME
GETQKLLRMEDELGRRLIGQSEAVRAVSDAVRRSRAGIADPDRPTGSFLFLGPTGVGKTELAKALADFLFDDERAMVRID
MSEYSEKHSVARLVGAPPGYVGYEEGGQLTEAVRRRPYTVVLLDEVEKAHPEVFDILLQVLDDGRLTDGQGRTVDFRNTI
LVLTSNLGSQYLVDPALDETEKKERVLETVRASFKPEFLNRLDDLVVFSALNQDELARIARLQIDRLARRLAERRLTLDV
TPEALAWLAEEGNDPAYGARPLRRLVQTAIGDRLAREILSGEITDGDTVRVDRFGEGLIVGPATGKTL

Nucleotide

• Length: 2607 bp

>NTDB_id=668203 OIB37_RS19960 WP_330461902.1 4413238..4415844(+) (clpC) [Streptomyces sp. NBC_00820]
GTGGACGCAGAGCTGACCAACAGGAGCCGGGAAGCGATCAACGCGGCCAGCCAGCGGGCCGTGACGGACGGGCACGCGGA
TCTGACGCCCGCTCACCTGCTCCTCGCTCTGCTCGCGGGGCAGGGGCGGCAGGAGAACGAGAACATCACCGACCTGCTGG
CCGCCGTCGACGCCGACCAGGCGGCCGTACGCGCGGGCGCCGAGCGCGTGCTCGCCGGGCTGCCCAGCGTGACCGGCTCC
ACCGTCGCGCCCCCGCAGCCCAGCCGTGAACTGCTCGCCGTCCTCGCGGACGCCGACGAGCGGGCGAAGGAACTCGGCGA
CGAGTACCTGTCCACCGAGCACCTGCTCATCGGTATCGCCGCCAGGGGCGGTGCGGCCGGCGAGGTGCTCACGGCGCAGG
GCGCCGACGCCAGGAAGTTGCAAGAGGCCTTCCAGAAGGCCAGGGGAGGACGCCGCGTGACCACCGCCGATCCCGAGGGT
CAGTACAAGGCCCTGGAGAAGTTCGGCACCGACTTCACCGCCGCCGCGCGCGAGGGCCGGCTCGACCCGGTCATCGGCCG
CGACCACGAGATCCGGCGGGTCGTGCAGGTGCTGAGCCGTCGTACCAAGAACAACCCCGTCCTCATCGGCGAGCCCGGTG
TCGGCAAGACCGCCGTGGTCGAGGGGCTCGCCCAGCGGATCGTGAAGGGCGACGTCCCCGAGTCCCTGAAGAACAAGCGG
CTCGTCTCGCTCGACCTCGGCGCGATGGTCGCCGGGGCCAAGTACCGCGGTGAGTTCGAGGAGCGGCTGAAGGCCGTGCT
CTCCGAGATCAAGGACTCCGACGGGCAGATCATCACCTTCATCGACGAGCTGCACACCGTCGTGGGCGCCGGCGCGGGCG
GCGACTCCGCGATGGACGCCGGCAACATGCTCAAGCCCATGCTCGCGCGCGGTGAGCTGCGCATGGTCGGTGCCACGACC
CTGGACGAGTACCGGGAGCGGATCGAGAAGGACCCCGCCCTGGAGCGCCGCTTCCAGCAGGTGCTGGTCGCCGAGCCGAG
CGTCGAGGACACCATCGCCATCCTGCGTGGCCTGAAGGGGCGTTACGAGGCCCACCACAAGGTGCAGATCGCCGACAGCG
CGCTGGTGGCCGCCGCCACCCTGTCCGACCGGTACATCACCTCCCGCTTCCTGCCCGACAAGGCCATCGACCTCGTCGAC
GAGGCCGCCTCGCGCCTGCGCATGGAGATCGACTCCTCGCCCGTCGAGATCGACGAACTCCAGCGCTCCGTCGACCGGTT
GAAGATGGAGGAACTGGCGATCGCCAAGGAGACCGACCCGGCCTCCGTCGCCCGCCTGGAGAAGCTGCGCCGCGACCTCG
CCGACAAGGAGGAGGAGCTGCGGGGCCTGACCGTGCGCTGGGAGAAGGAGAAGCAGTCCCTCAACCGCGTCGGTGAGCTG
AAGGAGAAGCTGGACGACCTGCGCGGCCAGGCCGAACGCGCCCAGCGCGACGGCGACTTCGACACCGCCGCCAAGCTGCT
CTACGGCGAGATCCCCGAGCTGGAGAAGGAGCTGGAGGCCGCCTCGGAGGCCGAGGAGGAGGCCGCCAGGGACACCATGG
TCAAGGAGGAGGTCGGCTCGGACGACATCGCCGACGTCGTCGCCGCCTGGACCGGCATCCCCGCCGGCCGCCTCATGGAG
GGCGAGACGCAGAAGCTGCTCCGCATGGAGGACGAGCTGGGCAGGCGGCTCATCGGCCAGAGCGAGGCCGTGCGCGCGGT
GAGCGACGCCGTACGACGCTCCCGTGCGGGCATCGCCGACCCCGACCGTCCCACCGGTTCCTTCCTCTTCCTCGGTCCGA
CCGGCGTCGGCAAGACCGAACTCGCCAAGGCACTCGCCGACTTCCTCTTCGACGACGAGCGGGCCATGGTCCGCATCGAC
ATGTCCGAGTACAGCGAGAAGCACAGCGTGGCCCGGCTGGTCGGCGCGCCCCCTGGGTACGTCGGCTACGAGGAGGGCGG
CCAGCTGACCGAGGCGGTGCGCCGGCGCCCGTACACCGTCGTCCTGCTGGACGAGGTGGAGAAGGCACACCCCGAGGTCT
TCGACATCCTGCTCCAGGTCCTCGACGACGGCCGCCTGACCGACGGCCAGGGCCGCACCGTCGACTTCCGCAACACCATC
CTGGTGCTCACCTCCAACCTGGGCAGCCAGTACCTGGTCGACCCGGCGCTCGATGAGACGGAGAAGAAGGAGCGGGTGCT
GGAGACGGTCCGCGCCTCCTTCAAGCCGGAGTTCCTCAACCGGCTCGACGACCTCGTGGTCTTCTCCGCCCTGAACCAGG
ACGAGCTGGCCCGCATCGCCCGGCTCCAGATCGACCGGCTCGCCCGGCGGCTGGCCGAGCGCCGCCTCACCCTGGACGTC
ACCCCCGAGGCGCTGGCCTGGCTCGCCGAGGAGGGCAACGACCCCGCCTACGGCGCCCGGCCGCTGCGCCGCCTCGTGCA
GACCGCCATCGGCGACCGCCTCGCCAGGGAGATCCTCTCCGGCGAGATCACGGACGGCGACACGGTCCGCGTGGACCGCT
TCGGCGAGGGCCTGATCGTGGGCCCGGCGACGGGCAAGACGCTCTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (207-341)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (98-149)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (16-71)

• AAA domain (Cdc48 subfamily) (AAA_2) (603-764)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (771-851)

• AAA lid domain (AAA_lid_9) (347-449)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	43.82	100	0.449
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	42.155	98.387	0.415
clpC	Lactococcus lactis subsp. cremoris KW2	47.323	79.608	0.377
clpE	Streptococcus mutans UA159	47.181	77.65	0.366