Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MP387_RS00130 Genome accession   NZ_CP094226
Coordinates   23618..24982 (+) Length   454 a.a.
NCBI ID   WP_278192668.1    Uniprot ID   -
Organism   Streptococcus oralis strain 1648     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 18618..29982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MP387_RS00100 (MP387_00100) comW 19966..20202 (+) 237 WP_242746665.1 sigma(X)-activator ComW -
  MP387_RS00105 (MP387_00105) - 20444..21730 (+) 1287 WP_242746668.1 adenylosuccinate synthase -
  MP387_RS00110 (MP387_00110) tadA 21931..22398 (+) 468 WP_242746670.1 tRNA adenosine(34) deaminase TadA -
  MP387_RS00120 (MP387_00120) - 22584..23027 (+) 444 WP_242746679.1 dUTP diphosphatase -
  MP387_RS00125 (MP387_00125) - 23091..23579 (+) 489 WP_242746683.1 hypothetical protein -
  MP387_RS00130 (MP387_00130) radA 23618..24982 (+) 1365 WP_278192668.1 DNA repair protein RadA Machinery gene
  MP387_RS00135 (MP387_00135) - 25055..25549 (+) 495 WP_007522536.1 carbonic anhydrase -
  MP387_RS00140 (MP387_00140) - 25763..26731 (+) 969 WP_000010174.1 ribose-phosphate diphosphokinase -
  MP387_RS00145 (MP387_00145) - 26851..27288 (+) 438 WP_000076495.1 CoA-binding protein -
  MP387_RS00150 (MP387_00150) - 27315..28325 (-) 1011 WP_242746685.1 YeiH family protein -
  MP387_RS00155 (MP387_00155) - 28476..29645 (+) 1170 WP_242746687.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49577.12 Da        Isoelectric Point: 6.1894

>NTDB_id=668071 MP387_RS00130 WP_278192668.1 23618..24982(+) (radA) [Streptococcus oralis strain 1648]
MIAKKKATFVCQNCGYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEV
ERIQPDFLIIDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGE
RHHTFRILRAVKNRFGSTNEIGIFEMQLGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKTTNPQECFVGELGLTGEI
RRVNRIEQRINEAAKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=668071 MP387_RS00130 WP_278192668.1 23618..24982(+) (radA) [Streptococcus oralis strain 1648]
ATCATCGCAAAGAAAAAAGCGACATTTGTATGTCAAAATTGTGGGTATAATTCCCCTAAATATCTGGGACGTTGTCCTAA
CTGTGGGTCTTGGTCTTCTTTTGTAGAAGAGGTTGAGGTTGCCGAGGTCAAGAATGCGCGTGTGTCCTTGACTGGTGAGA
AAACCAAGCCCATGAAACTGGCTGAGGTGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGT
GTACTTGGAGGCGGAGTGGTACCAGGGAGTCTCGTCCTTATCGGTGGGGATCCAGGGATTGGGAAATCAACCCTTCTCTT
ACAAGTATCGACTCAGCTGTCCCAAGTAGGGACTGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAACTCC
GTGCAGAGCGCTTGGGGGATATTGATAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTG
GAGCGCATCCAACCAGATTTTCTCATCATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTC
TGTGTCTCAGGTGCGTGAGGTAACGGCTGAACTCATGCAGTTGGCGAAGACTAATAACATTGCTATCTTTATCGTAGGAC
ATGTGACTAAGGAAGGAACCTTGGCAGGTCCGCGTATGTTGGAGCATATGGTGGATACGGTGCTTTACTTTGAAGGGGAG
CGCCACCATACCTTCCGTATTTTGAGGGCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCA
GTTGGGTGGATTGGTTGAGGTCCTCAATCCGAGTCAAGTTTTCCTAGAAGAGCGTTTGGATGGAGCGACTGGCTCATCAA
TCGTTGTGACCATGGAAGGGACCCGTCCGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCT
AAACGTACGACGACTGGACTTGATTTCAATCGTGCGAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTTTT
GCAAAACCAGGATGCCTATCTCAAATCTGCTGGTGGTGTGAAATTGGATGAGCCTGCCATTGACTTAGCCGTTGCAGTGG
CTATTGCCTCTAGTTACAAGGACAAGACTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATT
CGGCGCGTGAATCGTATCGAACAACGCATCAATGAAGCGGCAAAACTGGGCTTTACCAAGATTTATGTACCCAAGAATTC
CTTGACAGGAATCACTCCACCCAAGGAAATTGAAGTCATTGGTGTGACAACGATTCAAGAAGTTTTGAAAAAGGTCTTTG
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(361-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.896

99.78

0.987
  radA Streptococcus mitis SK321

98.675

99.78

0.985
  radA Streptococcus pneumoniae Rx1

98.675

99.78

0.985
  radA Streptococcus pneumoniae D39

98.675

99.78

0.985
  radA Streptococcus pneumoniae R6

98.675

99.78

0.985
  radA Streptococcus pneumoniae TIGR4

98.675

99.78

0.985
  radA Bacillus subtilis subsp. subtilis str. 168

63.135

99.78

0.63

Multiple sequence alignment