Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   MPF93_RS07040 Genome accession   NZ_CP094178
Coordinates   1447593..1448906 (-) Length   437 a.a.
NCBI ID   WP_245073591.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe060     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1442593..1453906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPF93_RS07010 (MPF93_07010) nadC 1443056..1443877 (-) 822 WP_154485535.1 carboxylating nicotinate-nucleotide diphosphorylase -
  MPF93_RS07015 (MPF93_07015) nadA 1443877..1444887 (-) 1011 WP_001141983.1 quinolinate synthase NadA -
  MPF93_RS07020 (MPF93_07020) - 1444874..1445680 (-) 807 WP_199492978.1 phosphatidylserine decarboxylase -
  MPF93_RS07025 (MPF93_07025) - 1445677..1446180 (-) 504 WP_048944092.1 hypothetical protein -
  MPF93_RS07030 (MPF93_07030) - 1446193..1446687 (-) 495 WP_220962379.1 hypothetical protein -
  MPF93_RS07035 (MPF93_07035) mqnP 1446680..1447564 (-) 885 WP_245073589.1 menaquinone biosynthesis prenyltransferase MqnP -
  MPF93_RS07040 (MPF93_07040) comEC/comE3 1447593..1448906 (-) 1314 WP_245073591.1 ComEC/Rec2 family competence protein Machinery gene
  MPF93_RS07045 (MPF93_07045) - 1448903..1450369 (-) 1467 WP_245073593.1 replicative DNA helicase -
  MPF93_RS07050 (MPF93_07050) - 1450380..1451774 (-) 1395 WP_245073602.1 NAD(P)H-hydrate dehydratase -
  MPF93_RS07055 (MPF93_07055) crdS 1451777..1452979 (-) 1203 WP_245074773.1 copper-sensing histidine kinase CrdS -
  MPF93_RS07060 (MPF93_07060) crdR 1452945..1453586 (-) 642 WP_024774021.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50223.17 Da        Isoelectric Point: 9.8513

>NTDB_id=668063 MPF93_RS07040 WP_245073591.1 1447593..1448906(-) (comEC/comE3) [Helicobacter pylori strain Hpfe060]
MKDKTFQGAFELLTTPKEYLLCGVILSLLLAFNLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYATIKEPLKNLQYRHAQFFGKIKPCSFLESLKSCFFQTYSFSLTRKQDFKSHWRRFIDSAHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSASVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQAFFKTSSFLVRSFQAISLS
VLVFLNMLIIAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLLLHAVDLGSLLDGILNMPLTIPTIFVFSPLWLLGVHLFLT
ILSTRFFKVYLSMNVLSAGFFLYCCYQYIIMPSSIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=668063 MPF93_RS07040 WP_245073591.1 1447593..1448906(-) (comEC/comE3) [Helicobacter pylori strain Hpfe060]
TTGAAAGATAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTGTTGTGTGGGGTTATTTTAAG
CCTTTTGTTGGCGTTCAATCTTTATTTAGAATATTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCCTGAACG
CTCAAATCTTGTTGCAATACCCCAAAACTAAAGATCAAAAAACCTATTTTGTTTTAAAGCTCCAATCAAAGGGCATGATC
TTTTATGCCACCATTAAAGAGCCTTTAAAAAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAAATCAAACCTTGCTC
GTTTTTGGAGTCTCTAAAATCATGCTTTTTTCAAACTTATTCGTTTTCTTTAACGCGAAAACAAGATTTCAAATCGCATT
GGCGCCGTTTCATTGACAGCGCTCATTCAAGCGCTTTAGTGGGTAATTTGTATCGAGCGTTGTTTATAGGGGATAGCTTG
AATAAAGACTTAAGAGATAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGTGCGAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTATTGTTATTAGATTTTTTACCCTCTTTTTTTAGGGCG
TTTTTAATGGGCTTGTTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAGCTTTTGATTTTAGCGTG
CTGTATCGCTATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTGTTTTTAAAACACACTCAAGCCTTTTTTAAAACCTCTTCTTTTTTGGTGCGATCGTTTCAAGCCATAAGCTTAAGC
GTATTGGTGTTTTTGAACATGCTCATCATTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTACCAACTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTACTCTTGCATGCTGTGGATTTGGGGTCTTTGCTGGATGGTA
TTTTAAACATGCCTTTAACAATCCCTACGATTTTTGTTTTTTCGCCTTTATGGCTTTTGGGGGTGCATTTATTTTTAACG
ATTCTAAGCACGCGTTTTTTTAAAGTTTATTTAAGCATGAATGTTTTAAGCGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGTTCAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

94.508

100

0.945

Multiple sequence alignment